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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYKY
EPHYDYFHDPPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPA
SLHGSCPTLKGDKWSATKWIHVAPIG

The query sequence (length=186) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2jig:B 195 193 0.9946 0.9487 0.9585 9.74e-134 3gze:B, 3gze:D
2 2jig:A 216 214 1.0000 0.8611 0.8692 1.39e-131 3gze:A, 3gze:C
3 5v7y:A 207 187 0.3441 0.3092 0.3422 1.70e-30 5hv0:A, 5hv0:B, 5hv4:A, 5iav:A, 5iav:B, 5iax:A, 5iax:B, 5v7y:B, 5v7y:D, 5v7y:C
4 6tp5:A 370 185 0.3118 0.1568 0.3135 1.37e-16 6tp5:B
5 6tp5:A 370 66 0.1075 0.0541 0.3030 0.57 6tp5:B
6 5c5u:B 190 182 0.2957 0.2895 0.3022 1.03e-13 5c5t:A, 5c5t:B, 5c5u:A
7 3oa8:A 229 51 0.0699 0.0568 0.2549 3.0 3oa8:C, 3oa8:E, 3ocd:A, 3ocd:C
8 6ldk:A 813 51 0.0753 0.0172 0.2745 4.0
9 7ju3:B 203 51 0.0860 0.0788 0.3137 4.4 8fw0:A, 8fw0:B, 8fw0:C, 8fw0:D, 8fw3:C, 8fw3:D, 8fw3:A, 8fw3:B, 8fw8:B, 8fw8:C, 8fw8:D, 7jnp:A, 7jnp:B, 7ju3:A, 8ssh:C, 8ssh:D, 8ssh:A, 8ssh:B
10 3ggl:A 161 54 0.1022 0.1180 0.3519 5.9 6oe2:A
11 4qbb:A 159 46 0.0860 0.1006 0.3478 7.6 4qbb:B, 4qbb:C
12 8ajk:B 447 32 0.0591 0.0246 0.3438 8.3 8ajj:C, 8ajj:A, 8ajj:B, 8ajj:D, 8ajk:A
13 7dqx:D 770 131 0.1667 0.0403 0.2366 9.0 7dqx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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