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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EWPTHTVCKEENLEIYYKSCDPQQDFAFSIDRCSDVTTHTFDIRAAMVLRQSIKELYAKVDLIINGKTVLSYSETLCGPG
LSKLIFCGKKKGEHLYYEGPITLGIKEIPQRDYTITARLTNEDRATVACADFTVKNYL

The query sequence (length=138) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3mu3:A 140 138 1.0000 0.9857 1.0000 2.15e-102 3mu3:B
2 3rg1:C 138 133 0.4565 0.4565 0.4737 4.26e-44 3rg1:O, 3rg1:D, 3rg1:H, 3rg1:L, 3rg1:P
3 3t6q:C 139 133 0.4348 0.4317 0.4511 1.13e-42 3m7o:A, 3m7o:D, 3t6q:D
4 3b2d:C 139 133 0.4275 0.4245 0.4436 2.67e-42 3b2d:D
5 2e59:A 144 132 0.1812 0.1736 0.1894 0.049 4g8a:C, 4g8a:D, 3ula:D, 3ula:B, 2z65:C, 2z65:D
6 5ijd:C 137 130 0.2101 0.2117 0.2231 0.16 5ijc:D, 5ijc:C, 5ijd:D, 7mlm:C, 3vq1:C, 3vq1:D, 3vq2:C, 3vq2:D
7 3h77:B 338 47 0.0942 0.0385 0.2766 0.66 3h77:A, 3h78:A, 3h78:B
8 7koe:A 282 64 0.1232 0.0603 0.2656 1.1 7koe:E
9 8cli:B 689 28 0.0942 0.0189 0.4643 1.7 8clj:B, 8clj:G, 8cll:B, 8cll:G
10 1w0n:A 120 48 0.1304 0.1500 0.3750 2.7 1ux7:A
11 6zga:B 786 90 0.1594 0.0280 0.2444 2.7 4bzi:E, 4bzi:L, 4bzi:M, 6gni:E, 1m2v:B, 6zga:F
12 3upp:A 445 44 0.1159 0.0360 0.3636 3.9 3upn:A, 3upn:B, 3upo:A, 3upo:B, 3upp:B
13 7z3n:Lk 80 48 0.1087 0.1875 0.3125 7.7 8i9x:Lk, 8i9y:Lk, 8i9z:Lk, 8ia0:Lk, 7olc:Lk, 7old:Lk, 8onz:Lk, 8oo0:Lk, 8pv1:Lk, 8pv2:Lk, 8pv3:Lk, 8pv4:Lk, 8pv5:Lk, 8pv6:Lk, 8pv7:Lk, 8pv8:Lk, 8pvk:Lk, 8pvl:Lk, 7z3o:Lk

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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