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BioLiP
>protein
EWAKHLLDTKYIEKYNIQNSNTLPMFMYIVFQGVLMYIGYRKLNSMGLIPNAKGDWLPWERIAHYNNGLQWFSD

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ktx:D 74 74 1.0000 1.0000 1.0000 5.69e-52 7kra:D
2 7miz:x 143 26 0.1351 0.0699 0.3846 0.92 7miz:k, 7tnq:w, 7tnq:x
3 3wst:I 644 39 0.1757 0.0202 0.3333 1.5 3wst:A, 3wst:D, 3wst:B, 3wst:C, 3wst:F, 3wst:E, 3wst:G, 3wst:H, 3wst:M, 3wst:N, 3wst:O, 3wst:P, 3wst:Q, 3wst:R, 3wst:J, 3wst:K, 3wst:L, 3x0d:A
4 5o1n:A 442 45 0.2568 0.0430 0.4222 3.2 5l78:A, 5l78:B, 5o1o:A, 5o1o:B
5 6h18:A 523 47 0.1757 0.0249 0.2766 3.6 6h0t:A, 6h0v:A, 6h19:A, 6h1a:A
6 5txe:A 652 33 0.1622 0.0184 0.3636 5.7 5txe:B
7 1aql:A 532 47 0.1622 0.0226 0.2553 7.6 1aql:B
8 8snb:6R 72 47 0.1757 0.1806 0.2766 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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