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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLK
FQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGF
TSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQT
YNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLL
DDNQFTRDAGINTDNIVALGLVYQF

The query sequence (length=345) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2j1n:A 346 345 1.0000 0.9971 1.0000 0.0 8i8r:A, 8i8r:C, 8i8r:B, 8i8x:A, 8i8x:C, 8i8x:B, 2j1n:B, 2j1n:C
2 2xe5:B 343 346 0.8928 0.8980 0.8902 0.0 2xe5:D
3 5fvn:A 342 346 0.8725 0.8801 0.8699 0.0 5fvn:B, 5fvn:C, 5fvn:D, 5fvn:E, 5fvn:F
4 8pyz:F 347 349 0.7942 0.7896 0.7851 0.0 5nup:A, 5nup:B, 5nup:C, 5o79:C, 5o79:A, 5o79:B, 8pyz:E, 8pyz:C, 7q3t:A, 7q3t:B, 7q3t:C, 7q3t:E, 7q3t:D, 7q3t:F, 6rck:C, 6rd3:A, 6rd3:B, 6rd3:C, 6rd3:D, 6rd3:E, 6rd3:F, 7szi:C
5 5o9c:A 348 353 0.7652 0.7586 0.7479 0.0 5o9c:D, 5o9c:B
6 6ene:A 329 349 0.6290 0.6596 0.6218 2.06e-136 6ene:C, 6ene:B
7 6zhp:B 341 359 0.6116 0.6188 0.5877 1.84e-128 7fdy:A, 7fdy:B, 7fdy:C, 7ff7:A, 7ff7:B, 7ff7:C, 3fyx:A, 4gcp:A, 4gcp:B, 4gcq:A, 4gcq:B, 4gcs:A, 1gfm:A, 1gfn:A, 1gfo:A, 1gfp:A, 1gfq:A, 4lse:A, 4lse:B, 4lse:C, 4lsi:A, 4lsi:B, 4lsi:C, 1mpf:A, 5nuo:C, 5nuo:A, 5nuo:E, 5nuq:A, 5nuq:B, 5nuq:D, 5nuq:F, 5nur:E, 5nur:C, 5nur:A, 3o0e:A, 3o0e:F, 3o0e:C, 3o0e:D, 3o0e:E, 3o0e:B, 2omf:A, 2zfg:A, 6zhv:B, 6zhv:A, 6zhv:C, 2zld:A, 2zld:B
8 5nxu:A 352 362 0.5855 0.5739 0.5580 2.53e-124 5nxu:B, 5nxu:C
9 4kr8:C 340 356 0.5449 0.5529 0.5281 6.47e-118 4kr4:C, 4kra:C
10 5o77:A 337 352 0.5391 0.5519 0.5284 3.88e-115
11 6ehb:C 320 353 0.2493 0.2687 0.2436 3.16e-09 6ehb:B, 6ehc:A, 6ehc:B, 5onu:A, 5onu:B, 5onu:C
12 6i97:A 763 61 0.0551 0.0249 0.3115 1.3 8b43:A, 6i96:A, 6i97:B, 6i98:A, 6z8a:A
13 5v2c:O 245 87 0.0725 0.1020 0.2874 3.0 5b5e:O, 5b5e:o, 5b66:O, 5b66:o, 7cji:O, 7cji:o, 7cjj:O, 7cjj:o, 7cou:O, 7cou:o, 5e79:O, 5e79:o, 5e7c:O, 5e7c:o, 4fby:O, 4fby:f, 8gn0:O, 8gn0:o, 8gn1:O, 8gn1:o, 8gn2:O, 8gn2:o, 5gth:O, 5gth:o, 5gti:O, 5gti:o, 5h2f:O, 5h2f:o, 8ir5:O, 8ir5:o, 8ir6:O, 8ir6:o, 8ir7:O, 8ir7:o, 8ir8:O, 8ir8:o, 8ir9:O, 8ir9:o, 8ira:O, 8ira:o, 8irb:O, 8irb:o, 8irc:O, 8irc:o, 8ird:O, 8ird:o, 8ire:O, 8ire:o, 8irf:O, 8irf:o, 8irg:O, 8irg:o, 8irh:O, 8irh:o, 8iri:O, 8iri:o, 4ixq:O, 4ixq:o, 4ixr:O, 4ixr:o, 6jlj:O, 6jlj:o, 6jlk:O, 6jlk:o, 6jll:O, 6jll:o, 6jlm:O, 6jlm:o, 6jln:O, 6jln:o, 6jlo:O, 6jlo:o, 6jlp:O, 6jlp:o, 3kzi:O, 4pbu:O, 4pbu:o, 4rvy:O, 4rvy:o, 4tnh:O, 4tnh:o, 4tni:O, 4tni:o, 4tnj:O, 4tnj:o, 4tnk:O, 4tnk:o, 4ub6:O, 4ub6:o, 4ub8:O, 4ub8:o, 5v2c:o, 4v62:AO, 4v62:BO, 4v82:BO, 5ws5:O, 5ws5:o, 5ws6:O, 5ws6:o, 3wu2:O, 3wu2:o, 7yq2:O, 7yq2:o, 7yq7:O, 7yq7:o, 5zzn:O, 5zzn:o
14 6hua:A 296 65 0.0667 0.0777 0.3538 5.5 6hua:B
15 9etn:A 551 63 0.0609 0.0381 0.3333 8.5
16 8omd:A 296 81 0.0638 0.0743 0.2716 8.8 8omd:C, 8omd:B, 8omd:D, 6p2d:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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