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BioLiP
>protein
EVVKFMDVYQRSYCHPIETLVDIFIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQ
HNKCECRPKK

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1kat:V 99 96 1.0000 0.9091 0.9375 3.66e-61 6d3o:A, 6d3o:B, 4glu:D, 1kat:W, 4kzn:A, 3qtk:A, 3qtk:D, 3qtk:F, 6v7k:B, 1vpp:V, 1vpp:W, 6z13:W, 6z3f:W, 6zbr:W, 6zcd:W
2 4hqu:A 95 63 0.2000 0.1895 0.2857 2.67e-05 4hqx:A
3 8hy9:A 159 48 0.1667 0.0943 0.3125 0.049
4 7pkt:r 158 32 0.1111 0.0633 0.3125 2.2
5 6awr:A 156 42 0.1333 0.0769 0.2857 2.5 6awr:B, 6aws:A, 6aws:C, 6awt:A, 6awt:B, 6awt:C, 6awt:D, 6awu:A, 6awu:B, 6awu:C, 6awu:D, 6awv:A, 6awv:B, 6awv:C, 6aww:B, 6aww:E, 6aww:D, 6aww:C, 6ax0:A, 6ax0:B, 6b1d:A, 6b1d:C, 4ma6:A
6 8g04:B 398 43 0.1333 0.0302 0.2791 5.5 8g04:C
7 2fge:A 979 34 0.1111 0.0102 0.2941 5.8 2fge:B
8 3feu:A 183 42 0.1444 0.0710 0.3095 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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