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BioLiP
>protein
EVSTLMKATVLMRQPGRVQEIVGALRKGGGDRLQVISDFDMTLSRFAYNGKRCPSSYNILDNSKIISEECRKELTALLHH
YYPIEIDPHRTVKEKLPHMVEWWTKAHNLLCQQKIQKFQIAQVVRESNAMLREGYKTFFNTLYHNNIPLFIFSAGIGDIL
EEIIRQMKVFHPNIHIVSNYMDFNEDGFLQGFKGQLIHTYNKNSSAEGKTNVILLGDSIGDLTMADGVPGVQNILKIGFL
NDKVEERRERYMDSYDIVLEKDETLDVVNGLLQHILC

The query sequence (length=277) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7zee:A 282 277 0.9964 0.9787 0.9964 0.0 7zeg:A, 7zeg:B, 7zeh:A, 7zeh:B, 7zeh:C, 7zeh:D
2 4fe3:A 291 280 0.5632 0.5361 0.5571 1.81e-117 2g06:A, 2g06:B, 2g07:A, 2g07:B, 2g08:A, 2g08:B, 2g09:A, 2g09:B, 2g0a:A, 2g0a:B, 2jga:A, 4kx3:A, 4kx5:A, 2vkq:A
3 4nv0:B 300 287 0.4043 0.3733 0.3902 2.73e-71 4nv0:A, 4nwi:A, 4nwi:B
4 2fea:A 225 121 0.1011 0.1244 0.2314 0.040 2fea:B
5 6iuy:A 585 139 0.1155 0.0547 0.2302 0.10 6iuy:B
6 6fku:A 511 57 0.0794 0.0431 0.3860 0.14 6fku:B
7 7qd4:A 908 46 0.0542 0.0165 0.3261 0.71 7qd4:D, 7qd5:A, 7qd5:D, 7qd6:A, 7qd6:D
8 7na0:A 981 92 0.0866 0.0245 0.2609 2.4 7na0:B, 4nm9:A, 4nm9:B, 4nma:A, 4nma:B, 4nmb:A, 4nmb:B, 4nmc:B, 4nmd:A, 4nmd:B, 4nme:A, 4nme:B, 4nmf:A, 4nmf:B
9 3jck:G 257 99 0.0975 0.1051 0.2727 4.4 3j47:V, 4o8x:B, 4ocl:B, 4ocl:E, 4ocm:B, 4ocm:E, 4owp:B, 5u4p:B, 5w83:B
10 5u8t:6 661 41 0.0469 0.0197 0.3171 5.7 6wgi:6
11 5v8f:6 692 41 0.0469 0.0188 0.3171 6.0 8b9a:6, 8b9b:6, 8b9c:6, 6eyc:6, 3ja8:6, 8kg6:6, 8kg8:6, 8kg9:6, 7p30:6, 7p30:E, 7p5z:6, 7p5z:E, 8p5e:6, 8p62:6, 8p63:6, 7pmk:6, 7pmn:6, 6ptn:m, 6ptn:6, 6pto:l, 6pto:6, 7pt6:6, 7pt6:F, 7pt7:6, 7pt7:F, 6rqc:6, 6skl:6, 6sko:6, 6u0m:6, 5u8s:6, 8w7m:6, 8xgc:6
12 7v3u:6 646 41 0.0469 0.0201 0.3171 6.7 7qhs:6, 7v3u:F, 7v3v:6, 7v3v:F, 7w8g:6, 7w8g:F, 7z13:6, 7z13:e
13 4q0z:A 322 57 0.0686 0.0590 0.3333 6.8 4q0w:A, 4q0z:B, 4q0z:E, 4q0z:F
14 6nej:B 346 53 0.0686 0.0549 0.3585 6.9 6neg:A, 6neg:B, 6neh:A, 6neh:B, 6nej:A
15 7un8:A 297 67 0.0614 0.0572 0.2537 7.1 7un8:B, 7un8:C, 7un8:D, 7un8:E, 7un8:F, 7un9:A, 7un9:B, 7un9:C, 7un9:D, 7un9:I, 7un9:J, 7un9:E, 7un9:F, 7un9:K, 7un9:L, 7una:A, 7una:B, 7una:C
16 1uhn:A 189 37 0.0469 0.0688 0.3514 8.1 2zfd:A
17 3la4:A 837 42 0.0542 0.0179 0.3571 8.8
18 7un9:H 261 67 0.0614 0.0651 0.2537 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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