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BioLiP
>protein
EVLVVTSKVKKLIKEKGQMNTSAETIDVLSKAIEQLCLKGVESAKADGRKTVMARDIVI

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fw7:D 63 59 1.0000 0.9365 1.0000 1.02e-35 9ezz:A, 9f0e:A, 8fw7:H
2 1jhd:A 396 42 0.2542 0.0379 0.3571 0.70
3 3ty7:B 454 50 0.3051 0.0396 0.3600 2.9
4 8gk3:A 473 58 0.3051 0.0381 0.3103 3.4 8gk3:J, 8gk3:B, 8gk3:I, 8gk3:C, 8gk3:K, 8gk3:D, 8gk3:E, 8gk3:F, 8gk3:G, 8gk3:H, 7mk8:A, 7mk8:B, 7uff:A
5 7b5s:H 216 31 0.1864 0.0509 0.3548 5.2
6 7b5l:H 423 31 0.1864 0.0260 0.3548 5.5 7b5n:H, 4kc9:A, 5udh:A
7 5tte:B 442 31 0.1864 0.0249 0.3548 5.5 7b5m:H, 2m9y:A, 1wd2:A
8 2cyb:A 319 59 0.2542 0.0470 0.2542 7.0 2cyb:B
9 5gsm:A 786 22 0.1864 0.0140 0.5000 7.1 5gsm:B
10 2a2g:A 158 31 0.1864 0.0696 0.3548 9.8 2a2g:B, 2a2g:C, 2a2g:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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