Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EVLKPRTLADLIRILHQLFAGDEVNVEEVQAIMEAYESDPTEWAMYAKFDQYRYTRNLVDQGNGKFNLMILCWGEGHGSS
IHDHTNSHCFLKMLQGNLKETLFAWPDKKSNEMVKKSERVLRENQCAYINDSVGLHRVENISHTEPAVSLHLYSPPFDTC
HAFDQRTGHKNKVTMTFHSKFGIRTPN

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6bgf:A 188 187 1.0000 0.9947 1.0000 1.21e-144 2atf:A, 2b5h:A, 6bgm:A, 6bpr:A, 6bps:A, 6bpt:A, 6bpu:A, 6bpv:A, 6bpw:A, 6bpx:A, 6cdh:A, 6cdn:A, 6e87:A, 5efu:A, 3eln:A, 5ezw:A, 2gh2:A, 5i0r:A, 5i0s:A, 5i0t:A, 5i0u:A, 2ic1:A, 4ieo:A, 4iep:A, 4ieq:A, 4ier:A, 4ies:A, 4iet:A, 4ieu:A, 4iev:A, 4iew:A, 4iex:A, 4iey:A, 4iez:A, 4jtn:A, 4jto:A, 4kwj:A, 4kwk:A, 4kwl:A, 6n42:A, 6n43:A, 4pix:A, 4piy:A, 4piz:A, 4pjy:A, 6u1m:A, 6u4l:A, 6u4s:A, 6u4v:A, 4ubg:A, 4ubh:A, 8vl9:D, 8vlb:D, 4xet:A, 4xez:A, 4xf0:A, 4xf1:A, 4xf3:A, 4xf4:A, 4xf9:A, 4xfa:A, 4xfb:A, 4xfc:A, 4xff:A, 4xfg:A, 4xfh:A, 4xfi:A, 4ysf:A, 4yyo:A, 4z82:A
2 3eqe:A 156 118 0.1658 0.1987 0.2627 3.26e-06 3eqe:B, 4qm8:A, 4qm8:B, 4qm9:A, 4qm9:B
3 7kov:B 194 117 0.1658 0.1598 0.2650 1.63e-05 7kov:A, 7kov:C, 7kov:D, 6xb9:A, 6xb9:B, 6xb9:C, 6xb9:D, 6xb9:E, 6xb9:F, 6xb9:G, 6xb9:H, 6xb9:I, 6xb9:J, 6xb9:K, 6xb9:L
4 4wvz:D 203 109 0.1444 0.1330 0.2477 3.97e-05 4tlf:A, 4tlf:B, 4tlf:C, 4tlf:D, 3uss:A, 3uss:B, 4wvz:A, 4wvz:B, 4wvz:C
5 4qma:A 192 91 0.1283 0.1250 0.2637 2.98e-04
6 8qfn:A 155 133 0.1658 0.2000 0.2331 0.008 8qfl:A, 8qfl:B, 8qfm:A, 8qfm:B, 8qfn:B, 8qfo:A, 8qfo:B, 8qfp:A, 8qfp:B, 8qfq:A, 8qfq:B, 8qfr:A, 8qfr:B
7 7rei:A 243 130 0.1497 0.1152 0.2154 0.52 8u9j:A, 8u9j:B, 8uan:A
8 2h0v:A 335 59 0.0856 0.0478 0.2712 3.5 2h0v:B, 8hfb:A, 8hfb:B, 1y3t:A, 1y3t:B
9 7lvz:D 246 140 0.1551 0.1179 0.2071 4.7 7lvz:A, 7lvz:B, 7lvz:C
10 7chi:A 220 103 0.1123 0.0955 0.2039 5.6
11 6pw5:B 782 39 0.0856 0.0205 0.4103 8.9 6pw5:D
12 2p50:B 356 27 0.0588 0.0309 0.4074 9.0 2p50:C, 2p50:D
13 6pw5:A 734 39 0.0856 0.0218 0.4103 9.4 6pw5:C
14 1yrr:B 334 27 0.0588 0.0329 0.4074 9.7
15 6pw4:B 675 39 0.0856 0.0237 0.4103 10.0 6pw4:D
16 6pw4:A 696 39 0.0856 0.0230 0.4103 10.0 6pw4:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218