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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EVDPRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDG
EKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSLSIFPKETILLSACLHMLPEIRYRQRYLDLLINESSRHT
FVTRTKIINFLRNFLNERGFFEVETPMMNLIAGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFR
NEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKV
TNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTE
RLEMFICGKEVLNAYTELNDPFKQKECFQLDSAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRP

The query sequence (length=476) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6agt:B 506 504 0.9979 0.9387 0.9425 0.0 6agt:A, 6agt:C, 6agt:D, 7bt5:A, 7bt5:B, 6hcu:A, 6hcu:B, 6hcv:A, 6hcv:B, 8k9s:A, 8k9s:B, 8k9u:A, 8k9u:B, 8k9v:A, 8k9v:B, 8k9w:A, 8k9w:B, 8k9x:A, 8k9x:B, 6ka6:A, 6ka6:B, 6ka6:C, 6ka6:D, 6kab:A, 6kab:B, 6kab:C, 6kab:D, 6kbf:A, 6kbf:B, 6kcn:A, 6kcn:B, 6kcn:C, 6kcn:D, 6kct:A, 6kct:B, 6kct:C, 6kct:D, 6l3y:B, 6l3y:A, 6l4q:B, 6l4q:A, 6m0t:A, 6m0t:B, 6m0t:C, 6m0t:D, 4pg3:A, 4pg3:B, 4pg3:C, 4pg3:D, 4ycv:A, 4ycv:B, 4ycv:C, 4ycv:D, 5zh2:B, 5zh3:A, 5zh3:B, 5zh4:A, 5zh4:B, 5zh5:A, 5zh5:B
2 5zh2:A 464 484 0.9580 0.9828 0.9421 0.0
3 6chd:A 506 507 0.5588 0.5257 0.5247 0.0 3bju:A, 3bju:B, 3bju:C, 3bju:D, 6chd:B, 4dpg:A, 4dpg:B, 4dpg:C, 4dpg:D, 4dpg:E, 4dpg:F, 4dpg:G, 4dpg:H, 7ea9:A, 7ea9:B, 7ea9:C, 7ea9:D, 6ild:A, 6ild:B, 6ilh:A, 6ilh:B, 4ycu:A, 4ycu:B, 4ycw:A, 4ycw:B, 4ycw:E, 4ycw:F
4 6bni:A 502 499 0.5525 0.5239 0.5271 0.0 6bni:B, 6c86:A, 6c86:B, 5eln:A, 5eln:B, 5eln:C, 5eln:D, 5elo:A, 5elo:B, 5elo:C, 5elo:D, 6hcw:A, 6hcw:B, 7zog:A, 7zog:B, 7zog:C, 7zog:D
5 5hgq:B 482 489 0.5483 0.5415 0.5337 1.98e-180 5hgq:A, 5hgq:D, 5hgq:C
6 7f6w:A 506 509 0.5168 0.4862 0.4833 6.37e-165
7 4up7:A 529 502 0.4622 0.4159 0.4382 1.32e-143 4up9:A, 4upa:A
8 3a74:A 484 483 0.4244 0.4174 0.4182 1.02e-113 3a74:B, 3a74:C, 3a74:D, 3e9h:A, 3e9h:B, 3e9h:C, 3e9h:D, 3e9i:A, 3e9i:B, 3e9i:C, 3e9i:D
9 1e1t:A 485 498 0.4349 0.4268 0.4157 5.82e-111 1e1o:A, 1e22:A, 1e24:A, 1lyl:A, 1lyl:B, 1lyl:C, 5yzx:A, 5yzx:B, 5yzx:C
10 1bbu:A 486 505 0.4307 0.4218 0.4059 4.34e-105
11 4ex5:A 486 498 0.3824 0.3745 0.3655 3.94e-93 4ex5:B
12 6wbd:B 485 500 0.3824 0.3753 0.3640 4.66e-92 6wbd:A
13 6aqg:C 490 501 0.3655 0.3551 0.3473 4.02e-90 6aqg:A, 6aqg:B, 6aqg:D, 5vl1:A, 5vl1:B, 5vl1:C, 5vl1:D
14 6nrz:A 517 516 0.3718 0.3424 0.3430 4.25e-88 6nrz:B, 6ns0:A, 6ns0:B, 6o3f:A, 6o3f:B
15 6aqh:B 490 505 0.3571 0.3469 0.3366 1.86e-79 6aqh:A, 6aqh:C, 6aqh:D
16 7qh8:A 471 494 0.3487 0.3524 0.3360 8.07e-78 7qhn:A, 7qi8:A
17 3a5z:C 324 336 0.1765 0.2593 0.2500 1.16e-23 3a5y:B, 3a5y:C, 3a5y:D, 3a5z:A, 3a5z:E, 3a5z:G, 3g1z:A, 3g1z:B
18 3a5y:A 297 336 0.1702 0.2727 0.2411 5.68e-22
19 1b8a:A 438 409 0.2101 0.2283 0.2445 1.02e-16 1b8a:B, 3nel:A, 3nem:A, 3nem:B
20 4o2d:B 515 378 0.1912 0.1767 0.2407 1.69e-13
21 1asy:A 490 347 0.1618 0.1571 0.2219 2.13e-11 1asy:B, 1asz:A, 1asz:B
22 4wj3:M 589 139 0.0861 0.0696 0.2950 3.87e-11 4wj3:N, 4wj3:O, 4wj3:P, 4wj4:A
23 4wj3:M 589 87 0.0588 0.0475 0.3218 1.49e-07 4wj3:N, 4wj3:O, 4wj3:P, 4wj4:A
24 1c0a:A 585 180 0.1071 0.0872 0.2833 1.28e-10 1il2:A, 1il2:B
25 1c0a:A 585 50 0.0504 0.0410 0.4800 1.55e-06 1il2:A, 1il2:B
26 6sjc:B 581 157 0.0798 0.0654 0.2420 7.31e-10 7ap4:A, 7ap4:B, 1efw:A, 1efw:B, 1g51:A, 1g51:B, 6hhv:A, 6hhv:B, 6hhw:A, 6hhw:B, 6hhx:A, 6hhx:B, 6sjc:A
27 6sjc:B 581 109 0.0735 0.0602 0.3211 9.76e-08 7ap4:A, 7ap4:B, 1efw:A, 1efw:B, 1g51:A, 1g51:B, 6hhv:A, 6hhv:B, 6hhw:A, 6hhw:B, 6hhx:A, 6hhx:B, 6sjc:A
28 5w25:A 583 149 0.0882 0.0720 0.2819 4.51e-09 5w25:B
29 5w25:A 583 33 0.0336 0.0274 0.4848 0.001 5w25:B
30 4o2d:A 580 180 0.1008 0.0828 0.2667 1.36e-08 4rmf:A
31 4o2d:A 580 54 0.0483 0.0397 0.4259 4.41e-05 4rmf:A
32 3kfu:C 377 388 0.1681 0.2122 0.2062 1.74e-07 3kfu:A, 3kfu:D, 3kfu:B
33 2xgt:B 433 163 0.0987 0.1085 0.2883 2.70e-06 2xgt:A, 2xti:A, 2xti:B
34 1x54:A 434 354 0.1723 0.1889 0.2316 4.61e-06 1x55:A
35 3m4p:A 435 336 0.1408 0.1540 0.1994 5.88e-05 3m4p:B, 3m4p:C, 3m4p:D
36 8tc8:A 435 339 0.1555 0.1701 0.2183 4.65e-04 8h53:A, 8h53:B, 8h53:C, 8h53:D, 8tc8:B, 8tc8:C, 8tc8:D, 8tc9:A, 8tc9:B, 8tc9:C, 8tc9:D
37 3p8v:A 294 331 0.1429 0.2313 0.2054 0.030 3p8v:B, 3p8y:A, 3p8y:B, 3reu:A, 3reu:B, 3rex:A, 3rex:B, 3rl6:A, 3rl6:B
38 7u0r:B 278 116 0.0693 0.1187 0.2845 0.23 8c49:A, 8c49:B, 8dqg:D, 8dqg:A, 8dqh:D, 8dqh:A, 8dqi:D, 8dqi:A, 8dqj:D, 7u0r:A
39 8ci0:AAA 666 195 0.0924 0.0661 0.2256 1.1 8ci0:BBB, 8ci0:CCC, 1itz:A, 1itz:B, 1itz:C
40 3wj8:A 298 61 0.0441 0.0705 0.3443 1.9 3wj8:B, 3wj8:D, 3wj8:E, 3wj8:F, 3wj8:G
41 7by6:A 299 26 0.0273 0.0435 0.5000 1.9
42 3mbo:E 375 84 0.0462 0.0587 0.2619 2.1 3mbo:A, 3mbo:C, 3mbo:H
43 7dpi:C 292 26 0.0273 0.0445 0.5000 2.4 7dpi:A
44 7rdm:B 231 87 0.0462 0.0952 0.2529 2.6
45 1ig0:B 319 147 0.0903 0.1348 0.2925 3.0 1ig0:A
46 2du3:A 534 68 0.0357 0.0318 0.2500 3.5 2du5:A, 2du6:A
47 3l4g:C 508 55 0.0378 0.0354 0.3273 3.5 3l4g:A, 3l4g:E, 3l4g:G, 3l4g:I, 3l4g:K, 3l4g:M, 3l4g:O
48 2du4:A 466 68 0.0357 0.0365 0.2500 3.6 2du3:B, 2du5:B, 2du6:B
49 6hxi:C 410 81 0.0546 0.0634 0.3210 3.9 6hxi:A, 6znw:A
50 6z1p:BS 433 130 0.0672 0.0739 0.2462 4.1
51 5mgu:A 407 44 0.0315 0.0369 0.3409 4.2 3cmq:A, 3hfv:A, 5mgh:A, 5mgw:A, 8p8x:A, 3teg:A, 3tup:A
52 5ewu:A 383 69 0.0441 0.0548 0.3043 5.1 5ewu:B
53 5hb3:C 709 27 0.0294 0.0197 0.5185 8.1 5hb3:A, 7tbi:D1, 7tbi:D2, 7tbi:D3, 7tbi:D4
54 5eg1:B 576 64 0.0399 0.0330 0.2969 8.1 5eg1:A, 5ofr:A, 5ofr:B, 4pl0:A, 4pl0:B, 8px9:A, 8px9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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