Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ETVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIYRHE
FVASAVIDGMMNVQLSTGVPVLSAVLTPHNYHDSAEHHRFFFEHFTVKGKEAARACVEILAAREKI

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2obx:A 150 146 1.0000 0.9733 1.0000 1.38e-105 2obx:E, 2obx:B, 2obx:C, 2obx:D, 2obx:F, 2obx:J, 2obx:G, 2obx:H, 2obx:I
2 1t13:A 150 145 0.6164 0.6000 0.6207 1.56e-64 1t13:E, 1t13:B, 1t13:C, 1t13:D
3 1c41:A 165 111 0.2534 0.2242 0.3333 5.38e-16 1c41:E, 1c41:B, 1c41:C, 1c41:D, 1c41:F, 1c41:J, 1c41:G, 1c41:H, 1c41:I
4 1rvv:A 154 115 0.2397 0.2273 0.3043 2.37e-14 1rvv:E, 1rvv:B, 1rvv:C, 1rvv:D, 1rvv:F, 1rvv:G, 1rvv:H, 1rvv:I, 1rvv:J, 1rvv:K, 1rvv:O, 1rvv:L, 1rvv:M, 1rvv:N, 1rvv:P, 1rvv:Q, 1rvv:R, 1rvv:S, 1rvv:T, 1rvv:U, 1rvv:V, 1rvv:W, 1rvv:X, 1rvv:Y, 1rvv:Z, 1rvv:4, 1rvv:1, 1rvv:2, 1rvv:3, 1zis:A, 1zis:E, 1zis:B, 1zis:C, 1zis:D, 1zis:F, 1zis:G, 1zis:H, 1zis:I, 1zis:J
5 1kyv:E 152 109 0.2329 0.2237 0.3119 1.85e-13 2a57:A, 2a57:E, 2a57:B, 2a57:C, 2a57:D, 2a58:A, 2a58:B, 2a58:C, 2a58:D, 2a58:E, 2a59:A, 2a59:E, 2a59:B, 2a59:C, 2a59:D, 1kyv:A, 1kyv:B, 1kyv:C, 1kyv:D, 1kyx:A, 1kyx:E, 1kyx:B, 1kyx:C, 1kyx:D, 1kyy:A, 1kyy:E, 1kyy:B, 1kyy:C, 1kyy:D
6 1ejb:A 168 110 0.1918 0.1667 0.2545 9.50e-10 1ejb:B, 1ejb:C, 1ejb:D, 1ejb:E
7 1nqu:A 154 139 0.2671 0.2532 0.2806 1.16e-09 1nqu:B, 1nqu:C, 1nqu:D, 1nqu:E, 1nqv:A, 1nqv:B, 1nqv:C, 1nqv:D, 1nqv:E, 1nqw:A, 1nqw:B, 1nqw:C, 1nqw:D, 1nqw:E, 1nqx:A, 1nqx:E, 1nqx:B, 1nqx:C, 1nqx:D
8 1c2y:A 155 73 0.1781 0.1677 0.3562 2.43e-09 1c2y:B, 1c2y:C, 1c2y:D, 1c2y:E, 1c2y:F, 1c2y:J, 1c2y:G, 1c2y:H, 1c2y:I, 1c2y:K, 1c2y:O, 1c2y:L, 1c2y:M, 1c2y:N, 1c2y:P, 1c2y:T, 1c2y:Q, 1c2y:R, 1c2y:S
9 4kq6:D 165 110 0.1918 0.1697 0.2545 4.23e-09 4kq6:C, 4kq6:I, 4kq6:J
10 2vi5:E 151 108 0.2397 0.2318 0.3241 9.83e-09 2c92:A, 2c92:B, 2c92:C, 2c92:D, 2c92:E, 2c94:A, 2c94:B, 2c94:C, 2c94:D, 2c94:E, 2c97:A, 2c97:B, 2c97:C, 2c97:D, 2c97:E, 2c9b:A, 2c9b:B, 2c9b:C, 2c9b:D, 2c9b:E, 2c9b:F, 2c9b:G, 2c9b:H, 2c9b:I, 2c9b:J, 2c9d:A, 2c9d:B, 2c9d:C, 2c9d:D, 2c9d:E, 2c9d:F, 2c9d:G, 2c9d:H, 2c9d:I, 2c9d:J, 2vi5:A, 2vi5:B, 2vi5:C, 2vi5:D, 2vi5:F, 2vi5:G, 2vi5:H, 2vi5:I, 2vi5:J, 1w19:A, 1w19:B, 1w19:C, 1w19:D, 1w19:E, 1w29:A, 1w29:B, 1w29:C, 1w29:D, 1w29:E
11 2f59:D 147 146 0.2534 0.2517 0.2534 3.12e-06 2f59:A, 2f59:E, 2f59:B, 2f59:C, 2o6h:A, 2o6h:B, 2o6h:C, 2o6h:D, 2o6h:E
12 7unf:P 468 37 0.0890 0.0278 0.3514 0.71 9b8p:D, 7khr:F, 7u8r:D, 7uzf:F, 7uzg:F, 6vq7:E, 6vq8:D, 6vqa:E, 6vqb:D, 6wlz:F, 6wm2:F, 6wm3:E
13 4mfz:A 319 94 0.1849 0.0846 0.2872 0.72
14 3ddh:A 229 64 0.1233 0.0786 0.2812 0.93 3ddh:B
15 6k61:B 740 54 0.1096 0.0216 0.2963 1.1 6jeo:aB, 6jeo:bB, 6jeo:cB, 6jeo:dB, 6k61:b, 6tcl:B1, 6tcl:B2, 6tcl:B, 6tcl:BB, 7y3f:B
16 8a22:Ao 117 62 0.1301 0.1624 0.3065 2.3 8apn:Ao, 8apo:Ao
17 7tmm:B 464 37 0.0890 0.0280 0.3514 4.2 7tmo:B, 7tmp:B
18 8crx:M 98 52 0.1096 0.1633 0.3077 5.2 8cvo:M
19 6sjy:B 175 34 0.0685 0.0571 0.2941 7.7 6sjy:A, 6sjy:C, 6sk1:A, 6sl8:A, 6sll:A, 6sll:B
20 3ejh:A 91 50 0.1096 0.1758 0.3200 8.1 3ejh:B, 3gxe:B, 3gxe:A
21 6ifu:A 706 36 0.0753 0.0156 0.3056 9.8
22 6ifr:A 694 36 0.0753 0.0159 0.3056 9.9 6ifl:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218