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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ETTYFELTALGLLSLVIGVLAGAVDTFFGKILLFLSAFRESHFLPLILFLPIIGICFTYLFQKYGDRSPQGMNLVFLVGQ
EEEKDIPLRLIPFVMVGTWLTHLFGGSAGRQGVAVQLGATIANRLGNWVRLEKYASTLIMIGMAAGFAGLFETPIAATFF
ALEVLVIGKFSHHALLPALLAAFTASTTSQWLGLEKFSLMLPQSVDLTIPVFLKLLVIGLIFGMVGGSFAGCLETMKRIM
KRRFPNPLWRIGIGALALVLLFVLLYQGRYSGLGTNLISASFTNQPIYSYDWLLKLVLTVLTISSGFLGGEVTPLFAIGS
SLGVVLAPLFGLPIELVAALGYASVFGSATSTLFAPIFIGGEVFGFQNLPFFVIVCSVAYFISKPYSIYPLQKTSA

The query sequence (length=396) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6d0j:B 396 396 0.9975 0.9975 0.9975 0.0 6d0j:A, 6d0k:A, 6d0k:B, 6d0n:A, 6d0n:B
2 1kpl:B 451 248 0.1641 0.1441 0.2621 1.84e-06 1kpl:A, 1kpl:C, 1kpl:D
3 6j3y:J 34 32 0.0379 0.4412 0.4688 0.068 6j3y:j, 6j3z:J, 6j3z:j, 6j40:J, 6j40:j, 7vd5:J, 7vd5:j
4 8iab:A 704 69 0.0530 0.0298 0.3043 0.072 8iab:B, 8iad:A, 8iad:B, 7xa9:A, 7xa9:B
5 8xme:A 1176 52 0.0404 0.0136 0.3077 0.38 7eu0:A, 8xmb:A, 8xmc:A, 8xmd:A
6 7eu1:A 1065 52 0.0404 0.0150 0.3077 0.42
7 8ga1:A 450 116 0.0884 0.0778 0.3017 1.3 6adc:A, 6adc:B, 4ene:B, 4ene:A, 8ga1:B, 8ga3:A, 8ga5:A, 8ga5:B, 8gah:A, 8gah:B, 2h2p:A, 2h2p:B, 2h2s:A, 2h2s:B, 4kjq:A, 4kjq:B, 4kk8:A, 4kk8:B, 4kkl:A, 4kkl:B, 6lsc:A, 1ots:A, 1ots:B, 1ott:A, 1ott:B, 1otu:A, 1otu:B
8 1cdo:A 374 65 0.0455 0.0481 0.2769 2.6 1cdo:B
9 6ao7:A 153 65 0.0505 0.1307 0.3077 2.9
10 6coy:A 465 60 0.0429 0.0366 0.2833 5.3 6coy:B
11 1b33:A 160 83 0.0682 0.1688 0.3253 7.0 6yx7:KKK, 6yx8:AAA, 6yx8:CCC, 6yx8:EEE
12 7wtt:q 235 106 0.0707 0.1191 0.2642 7.8 6g4w:q, 7wts:q, 7wtu:q, 7wtv:q, 7wtw:q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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