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BioLiP
>protein
ETSGEGAVLFGQHCAGCHVNGGNIIRRGKNLKLATLKRQGLDSTEAIASIARKGIGQMSGYGDKLGEGGDQLVAGWILEQ
AQNAWTQG

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4kmg:A 88 88 1.0000 1.0000 1.0000 2.21e-59
2 4eie:A 82 81 0.4773 0.5122 0.5185 3.03e-26 4eif:A
3 2dge:A 102 93 0.3750 0.3235 0.3548 3.08e-13 2ce0:A, 2ce1:A, 2dge:C, 2dge:B, 2dge:D, 2v07:A
4 1c6s:A 87 81 0.3182 0.3218 0.3457 7.87e-12 6tr1:A, 6tr1:C, 6tr1:E, 6tsy:A, 6tsy:B, 6tsy:C, 6tsy:D, 6tsy:E, 6tsy:F
5 3ph2:B 85 80 0.2955 0.3059 0.3250 9.03e-12 2v08:A, 2v08:B
6 7y5e:GN 84 80 0.2841 0.2976 0.3125 8.54e-11 7y5e:G2, 7y7a:G7, 7y7a:Go
7 4gyd:A 86 83 0.3182 0.3256 0.3373 1.37e-10 4gyd:B, 4gyd:C, 4gyd:D, 4gyd:E, 4gyd:F, 4h0j:A, 4h0j:B, 4h0j:C, 4h0j:D, 4h0j:E, 4h0j:F, 4h0k:A, 4h0k:B
8 1gdv:A 85 80 0.2614 0.2706 0.2875 2.78e-09
9 2zbo:A 86 80 0.2614 0.2674 0.2875 3.85e-09 2zbo:C, 2zbo:E, 2zbo:G, 2zbo:I, 2zbo:K
10 1kib:A 89 85 0.3068 0.3034 0.3176 5.32e-09 1f1f:A, 1kib:B, 1kib:C, 1kib:D, 1kib:E, 1kib:F, 1kib:G, 1kib:H
11 1cyj:A 90 82 0.3409 0.3333 0.3659 1.15e-08 1cyi:A
12 3dp5:A 99 64 0.2386 0.2121 0.3281 3.98e-08 3cu4:A, 5mcs:A, 6u97:A
13 1ls9:A 91 86 0.2955 0.2857 0.3023 4.10e-08
14 3dr0:A 93 78 0.3068 0.2903 0.3462 1.48e-06 3dr0:B, 3dr0:C, 4eic:A, 4eid:A
15 3dmi:A 87 89 0.2955 0.2989 0.2921 1.28e-05
16 1a2s:A 89 84 0.3182 0.3146 0.3333 9.43e-05 1ced:A, 1ctj:A
17 1c6o:A 89 74 0.2500 0.2472 0.2973 4.37e-04 1c6o:B, 1c6r:A
18 7o9u:A 153 84 0.2614 0.1503 0.2738 0.003
19 4yuu:V1 129 97 0.3409 0.2326 0.3093 0.004 4yuu:v1, 4yuu:V2, 4yuu:v2
20 6btm:E 161 81 0.2727 0.1491 0.2963 0.005
21 7o38:A 81 73 0.2500 0.2716 0.3014 0.009
22 3a0b:V 137 57 0.2273 0.1460 0.3509 0.17 3a0b:v, 3a0h:V, 3a0h:v, 2axt:V, 2axt:v, 5b5e:V, 5b5e:v, 5b66:V, 5b66:v, 7cji:V, 7cji:v, 7cjj:V, 7cjj:v, 7cou:V, 7cou:v, 7d1t:V, 7d1t:v, 7d1u:V, 7d1u:v, 6dhe:V, 6dhe:v, 6dhf:V, 6dhf:v, 6dhg:V, 6dhg:v, 6dhh:V, 6dhh:v, 6dho:V, 6dho:v, 6dhp:V, 6dhp:v, 5e79:V, 5e79:v, 5e7c:V, 5e7c:v, 7eda:V, 9evx:V, 9evx:v, 8ez5:V, 8ez5:v, 8f4c:V, 8f4c:v, 8f4d:V, 8f4d:v, 8f4e:V, 8f4e:v, 8f4f:V, 8f4f:v, 8f4g:V, 8f4g:v, 8f4h:V, 8f4h:v, 8f4i:V, 8f4i:v, 8f4j:V, 8f4j:v, 8f4k:V, 8f4k:v, 4fby:V, 4fby:i, 8gn0:V, 8gn0:v, 8gn1:V, 8gn1:v, 8gn2:V, 8gn2:v, 5gth:V, 5gth:v, 5gti:V, 5gti:v, 5h2f:V, 5h2f:v, 4il6:V, 4il6:v, 8ir5:V, 8ir5:v, 8ir6:V, 8ir6:v, 8ir7:V, 8ir7:v, 8ir8:V, 8ir8:v, 8ir9:V, 8ir9:v, 8ira:V, 8ira:v, 8irb:V, 8irb:v, 8irc:V, 8irc:v, 8ird:V, 8ird:v, 8ire:V, 8ire:v, 8irf:V, 8irf:v, 8irg:V, 8irg:v, 8irh:V, 8irh:v, 8iri:V, 8iri:v, 4ixq:V, 4ixq:v, 4ixr:V, 4ixr:v, 1izl:V, 1izl:0, 6jlj:V, 6jlj:v, 6jlk:V, 6jlk:v, 6jll:V, 6jll:v, 6jlm:V, 6jlm:v, 6jln:V, 6jln:v, 6jlo:V, 6jlo:v, 6jlp:V, 6jlp:v, 5kaf:V, 5kaf:v, 5kai:V, 5kai:v, 3kzi:V, 5mx2:V, 5mx2:v, 1mz4:A, 4pbu:V, 4pbu:v, 4pj0:V, 4pj0:v, 7rf1:V, 7rf1:v, 7rf2:V, 7rf2:v, 7rf3:V, 7rf3:v, 7rf4:V, 7rf4:v, 7rf5:V, 7rf5:v, 7rf6:V, 7rf6:v, 7rf7:V, 7rf7:v, 7rf8:V, 7rf8:v, 4rvy:V, 4rvy:v, 1s5l:V, 1s5l:v, 5tis:V, 5tis:v, 4tnh:V, 4tnh:v, 4tni:V, 4tni:v, 4tnj:V, 4tnj:v, 4tnk:V, 4tnk:v, 4ub6:V, 4ub6:v, 4ub8:V, 4ub8:v, 5v2c:V, 5v2c:v, 4v62:AV, 4v62:BV, 4v82:AV, 4v82:BV, 6w1o:V, 6w1o:v, 6w1p:V, 6w1p:v, 6w1q:V, 6w1q:v, 6w1r:V, 6w1r:v, 6w1t:V, 6w1t:v, 6w1u:V, 6w1u:v, 6w1v:V, 6w1v:v, 1w5c:T, 1w5c:V, 5ws5:V, 5ws5:v, 5ws6:V, 5ws6:v, 3wu2:V, 3wu2:v, 7yq2:V, 7yq2:v, 7yq7:V, 7yq7:v, 5zzn:V, 5zzn:v
23 1txg:A 335 36 0.1591 0.0418 0.3889 0.18 1txg:B
24 5mxy:A 83 65 0.2386 0.2530 0.3231 0.35 5mxz:A
25 4lji:A 133 32 0.1364 0.0902 0.3750 0.92 4lji:B
26 5djq:C 303 72 0.2500 0.0726 0.3056 1.5 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
27 5kh0:A 363 20 0.1023 0.0248 0.4500 3.0 5kh0:B, 5kh0:C, 5kh0:D
28 2g7f:A 208 55 0.1364 0.0577 0.2182 3.1 2g7e:A, 2vnd:A
29 7sfz:A 100 47 0.2386 0.2100 0.4468 3.9 7sfz:B, 7sfz:C, 7sfz:D, 7sfz:E, 7sfz:F, 7sfz:G
30 7vzg:C 193 28 0.1591 0.0725 0.5000 4.2 7vzr:C
31 1l9m:B 681 31 0.1250 0.0162 0.3548 4.6 1l9m:A, 1l9n:A, 1l9n:B, 1nud:A, 1nud:B, 1nuf:A, 1nug:A, 1nug:B, 8oxv:A, 8oxw:A, 8oxx:A
32 8gzg:Z 1175 37 0.1705 0.0128 0.4054 4.9
33 1hds:B 145 56 0.1818 0.1103 0.2857 5.1 1hds:D
34 2ctz:A 421 109 0.3750 0.0784 0.3028 5.1 2ctz:B
35 8dko:B 393 43 0.1818 0.0407 0.3721 5.3 8dko:A, 8dkp:A, 8dkp:B, 8dkq:B, 8w0k:B
36 6p5u:E 246 42 0.1591 0.0569 0.3333 5.4 6p5u:A, 6p5u:B, 6p5u:C, 6p5u:D, 6p5u:F
37 1fcd:C 174 20 0.1023 0.0517 0.4500 5.8 1fcd:D
38 3va7:A 1130 35 0.1364 0.0106 0.3429 7.4
39 3my9:A 357 54 0.1932 0.0476 0.3148 7.5
40 8hyj:C 285 22 0.1136 0.0351 0.4545 7.8
41 2ivk:B 213 55 0.1477 0.0610 0.2364 7.8 2ivk:A, 2ivk:D, 2ivk:C, 1ouo:A, 1oup:B, 1oup:A
42 6dt7:B 404 50 0.2159 0.0470 0.3800 9.9 6dt8:B, 6dta:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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