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BioLiP
>protein
ETLTVHAPSPSTNLPSYGNGAFSLSAPHVPGAGPLLVQVVYSFFQSPNMCLQALTQLEDYIKKHGASNPLTLQIISTNIG
YFCNADRNLVLHPGISVYDAYHFAKPAPSQYDYRSMNMKQMSGNVTTPIVALAHYLWGNGAERSVNIANIGLKISPMKIN
QIKDIIKSGVVGTFPVSTKFTHATGDYNVITGAYLGNITLKTEGTLTISANGSWTYNGVVRSYDDKYDFNASTHRGIIGE
SLTRLGAMFSGKEYQILLPGEIHIKESGKR

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3da3:A 270 270 1.0000 1.0000 1.0000 0.0 3da3:B, 2xmx:A, 2xmx:B
2 4n58:A 266 146 0.2481 0.2519 0.4589 1.95e-39 4n58:B, 4n59:A, 4n59:B
3 8jc1:A 267 144 0.2481 0.2509 0.4653 1.08e-38 8jc1:B, 8jc1:C, 8jc1:D
4 4fzm:A 276 149 0.2074 0.2029 0.3758 1.76e-25 4fzl:A, 4fzl:B
5 4g75:A 292 157 0.2000 0.1849 0.3439 5.66e-22
6 8b0r:A 496 56 0.0667 0.0363 0.3214 0.90
7 4eso:B 251 86 0.0963 0.1036 0.3023 1.1 4eso:A, 4eso:C, 4eso:D
8 4e1k:A 450 65 0.0667 0.0400 0.2769 1.4 4knr:A, 4knx:A, 4kpx:A, 4kpz:A, 4kql:A, 2v0i:A, 2v0j:A, 2v0k:A, 2v0l:A, 2vd4:A, 2w0v:A, 2w0w:A
9 7jn7:A 846 63 0.0704 0.0225 0.3016 2.8 6eor:A, 6eor:C, 6eor:D, 7jn7:D, 6qzv:A, 6qzv:C, 6qzv:D, 7svl:A, 7svl:B, 7svl:C, 7svl:D, 7svn:A, 7svn:B, 7svn:C, 7svn:D, 6x6c:A, 6x6c:D, 7zxs:A, 7zxs:B, 7zxs:C, 7zxs:D
10 7vsj:A 160 39 0.0519 0.0875 0.3590 3.2 6fqr:A, 6gx6:A, 7yew:A, 7yew:C, 7yex:A
11 1bqb:A 301 73 0.0889 0.0797 0.3288 4.0 7skl:C, 7skl:A, 7skm:C, 7skm:A
12 6d4b:A 361 26 0.0407 0.0305 0.4231 4.8 6d4b:B, 6d4c:A, 6d4c:B, 5dn9:A, 5dn9:B
13 8jjr:F 225 56 0.0593 0.0711 0.2857 7.1
14 3f5f:A 656 110 0.1185 0.0488 0.2909 7.9 4ndz:A, 4ndz:B, 4ndz:C, 4ndz:D, 4ndz:E, 4ndz:F
15 8bha:A 336 60 0.0704 0.0565 0.3167 9.0 8bgi:A, 8bgi:E, 8bgi:B, 8bgi:C, 8bgi:D, 8bha:E, 8bha:B, 8bha:C, 8bha:D, 8bhb:A, 8bhb:E, 8bhb:B, 8bhb:C, 8bhb:D, 8bhg:A, 8bhg:E, 8bhg:C, 8bhg:D, 8bhi:A, 8bhi:E, 8bhi:B, 8bhi:C, 8bhi:D, 8bhk:A, 8bhk:B, 8bhk:C, 8bhk:D, 8bhk:E, 8bhm:A, 8bhm:E, 8bhm:B, 8bhm:C, 8bhm:D, 8bho:A, 8bho:E, 8bho:B, 8bho:C, 8bho:D, 8bhq:A, 8bhq:E, 8bhq:B, 8bhq:C, 8bhq:D, 8bhr:A, 8bhr:E, 8bhr:B, 8bhr:C, 8bhr:D, 8bhs:A, 8bhs:E, 8bhs:B, 8bhs:C, 8bhs:D
16 6jsc:B 168 59 0.0741 0.1190 0.3390 9.3 6jsa:A, 6jsc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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