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BioLiP
>protein
ETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGSDDWSEEP

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1lv3:A 65 61 1.0000 0.8769 0.9344 2.19e-35 4tma:I, 4tma:J, 4tma:L
2 6nr1:A 279 25 0.2105 0.0430 0.4800 0.63 6nr1:B
3 5k2m:F 53 56 0.2807 0.3019 0.2857 0.88 5k2m:E
4 3dzv:A 265 30 0.2281 0.0491 0.4333 2.6 3dzv:B
5 7sa4:8 203 34 0.1930 0.0542 0.3235 4.6
6 5xyi:a 100 22 0.1754 0.1000 0.4545 4.7
7 3d3w:A 244 20 0.1579 0.0369 0.4500 6.3 3d3w:B, 1pr9:A, 1pr9:B, 1wnt:A, 1wnt:B, 1wnt:C, 1wnt:D
8 3ven:A 571 19 0.1579 0.0158 0.4737 9.7 3veo:A, 3ver:A, 3ves:A, 3vet:A, 3vew:A, 3vex:A, 3vez:A, 3vf2:A, 3vf4:A
9 2f0c:B 148 32 0.2456 0.0946 0.4375 9.7 2f0c:A, 2f0c:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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