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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ETFYSVRMRASMNGGKHISGGERLIPFHEMKHTVNALLEKGLSHSRGKPDFMQIQFEEVHESIKTIQPLPVHTNEVSCPE
EGQKLARLLLEKEGVSRDVIEKAYEQIPEWSDVRGAVLFDIHTGKRMDQTKEKGVRVSRMDWPDANFEKWALHSHVPAHS
RIKEALALASKVSRHPAVVAELCWSDDPDYITGYVAGKKMGYQRITAMKEYGTEEGCRVFFIDGSNDVNTYIHDLEKQPI
LIEWEED

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5flg:A 253 250 1.0000 0.9763 0.9880 0.0 5flg:B, 5fll:A, 5fll:B, 5fm0:A, 5fm0:B, 5g1f:A, 5g1f:B
2 5tv6:A 239 248 0.4008 0.4142 0.3992 2.20e-48 5tv6:B, 5tv8:A, 5tv8:B, 5tva:A, 5tva:B
3 7orm:A 2145 95 0.1134 0.0131 0.2947 1.7
4 6z8k:A 2158 95 0.1134 0.0130 0.2947 1.7 5amq:A, 7orn:A
5 7orl:A 2183 95 0.1134 0.0128 0.2947 1.7 7oa4:AAA, 7oa4:BBB, 7oa4:DDD, 7oa4:GGG, 7ork:A, 7plr:AAA, 7plr:BBB, 7plr:DDD, 7plr:GGG, 2xi5:A, 2xi5:B, 2xi5:C, 2xi5:D, 2xi7:A, 2xi7:B, 2xi7:C, 2xi7:D
6 6d4k:A 238 60 0.0648 0.0672 0.2667 1.7 6d51:A, 4k73:A
7 6z6b:PPP 2036 95 0.1134 0.0138 0.2947 1.7 6z6b:EEE
8 7oro:A 2008 95 0.1134 0.0139 0.2947 1.7 7ori:A
9 7orj:A 2129 95 0.1134 0.0132 0.2947 1.8
10 6z6g:A 2142 95 0.1134 0.0131 0.2947 1.8 5amr:A
11 3gde:A 551 112 0.1134 0.0508 0.2500 2.8
12 2azq:A 309 35 0.0486 0.0388 0.3429 4.2
13 8dtz:A 4061 33 0.0405 0.0025 0.3030 6.4 8dtz:B, 8dtz:C, 8dtz:D
14 6ndl:A 323 70 0.0769 0.0588 0.2714 6.8 6apw:A, 6aqq:A, 4dq2:A, 8eni:A, 4ha8:A, 6oru:A, 3rir:A, 3rkw:A, 3rky:A, 3v7c:A, 3v7r:A, 3v7s:A, 3v8k:A, 3v8l:A
15 5xfm:A 632 42 0.0486 0.0190 0.2857 9.9 5xfm:B, 5xfm:C, 5xfm:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218