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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ESTSLYKKAGFLVPRGSGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVE
KPVKMLIYSSKTLELREASVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMN
ESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGYGYLHRIPTRPFE

The query sequence (length=224) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5gmj:B 224 224 1.0000 1.0000 1.0000 9.68e-168 5gmi:A, 5gmi:B, 5gmj:A, 5h3j:A
2 4kfv:A 199 194 0.6071 0.6834 0.7010 1.36e-107 4rey:A
3 7xs0:A 376 156 0.1696 0.1011 0.2436 0.001
4 6xa7:B 96 92 0.1295 0.3021 0.3152 0.030 7qrt:A, 7qrt:B, 6xa7:A, 6xa7:C, 6xa7:D
5 5bsm:A 530 88 0.1161 0.0491 0.2955 0.034 5bsm:B, 5bsr:A, 5bst:A, 5bsu:A, 5bsv:A, 5bsw:A, 5bsw:B, 5u95:D, 5u95:B, 5u95:C
6 5wkr:A 215 75 0.1071 0.1116 0.3200 0.42 5wks:A
7 5el2:A 125 49 0.0759 0.1360 0.3469 0.91 5el2:B, 4fqt:A, 4fqt:B, 3n7h:A, 3n7h:B, 3ogn:A, 3ogn:B
8 3ch8:A 190 150 0.1830 0.2158 0.2733 1.0 2qbw:A
9 4ynn:A 400 58 0.0893 0.0500 0.3448 1.1 4ynn:B, 4ynn:C, 4ynn:D, 4ynn:E, 4ynn:F, 4ynn:G, 4ynn:H
10 1aut:C 240 69 0.0670 0.0625 0.2174 1.3 3f6u:H
11 2egn:A 83 47 0.0893 0.2410 0.4255 1.8
12 3pv3:A 392 35 0.0714 0.0408 0.4571 2.9 3pv3:B, 3pv3:C, 3pv3:D
13 6rxt:UG 479 45 0.0625 0.0292 0.3111 4.9 5oql:F, 6rxu:UG, 6rxv:UG, 6rxx:UG, 6rxy:UG, 6rxz:UG
14 8xlp:g 147 55 0.0893 0.1361 0.3636 5.7 8xlp:G
15 6ar4:B 87 52 0.0714 0.1839 0.3077 6.1 6ar4:A, 6bjo:A, 6bjo:B, 2pku:A
16 2aco:A 168 16 0.0580 0.0774 0.8125 6.6 2aco:B, 6ubo:A, 6ubo:B, 6ukl:E, 6ukl:D, 6ukl:F, 6vri:D, 6vri:E, 6vri:F
17 2r4h:C 98 28 0.0536 0.1224 0.4286 6.7
18 3wy9:A 416 69 0.0804 0.0433 0.2609 7.0 3wy9:B, 3wya:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218