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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ESSRSAMMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIR
CLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL
DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGR
LDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFKCRHLQI
DIERLVD

The query sequence (length=327) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3obv:D 327 327 1.0000 1.0000 1.0000 0.0 2bap:B, 2bap:A, 2f31:A, 8fg1:A, 3obv:A, 3obv:B, 3obv:C, 4uwx:A, 4uwx:B
2 1q0d:A 117 59 0.0550 0.1538 0.3051 0.19 1q0d:B, 1q0d:C, 1q0d:D, 1q0d:E, 1q0d:F, 1q0d:G, 1q0d:H, 1q0d:I, 1q0d:J, 1q0d:K, 1q0d:L, 1q0f:A, 1q0f:B, 1q0f:C, 1q0f:D, 1q0f:E, 1q0f:F, 1q0f:G, 1q0f:H, 1q0f:I, 1q0f:J, 1q0f:K, 1q0f:L, 1q0g:A, 1q0g:B, 1q0g:C, 1q0g:D, 1q0g:E, 1q0g:F, 1q0g:G, 1q0g:H, 1q0g:I, 1q0g:J, 1q0g:K, 1q0g:L, 1q0k:A, 1q0k:B, 1q0k:C, 1q0k:D, 1q0k:E, 1q0k:F, 1q0k:G, 1q0k:I, 1q0k:H, 1q0k:J, 1q0k:K, 1q0k:L, 1q0m:A, 1q0m:B, 1q0m:C, 1q0m:D, 1q0m:E, 1q0m:F
3 6z1p:As 236 40 0.0459 0.0636 0.3750 0.34
4 4awd:A 297 23 0.0306 0.0337 0.4348 0.60 4awd:B
5 1gwe:A 498 136 0.0887 0.0582 0.2132 0.71 1gwf:A, 1gwh:A, 1hbz:A
6 8rxh:LO 298 75 0.0642 0.0705 0.2800 1.7 8a3w:O, 8a98:O, 6az3:O, 8ovj:O, 8rxx:LO
7 2k4i:A 134 44 0.0367 0.0896 0.2727 1.9
8 1hup:A 141 61 0.0581 0.1348 0.3115 4.4
9 8gzh:Z 1217 52 0.0642 0.0173 0.4038 4.5
10 8gzg:Z 1175 52 0.0642 0.0179 0.4038 5.0
11 6zhe:F 3731 75 0.0673 0.0059 0.2933 7.0
12 4by9:F 366 76 0.0642 0.0574 0.2763 7.3 4by9:I, 4by9:C, 4by9:L, 3nmu:A, 3nmu:B, 3nvi:A, 3nvi:C, 3nvk:A, 3nvk:F
13 6zhe:A 3768 78 0.0673 0.0058 0.2821 8.6
14 2gbx:D 170 120 0.0734 0.1412 0.2000 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218