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BioLiP
>protein
ESRDVYLSDLDWLNATHGDDTKSKIVQKNHPFTPGNNNQSTKISLKMEDGSISEFEKGLGTIAGSPSTITYDISGAGVTK
FFSYLGIDRSANPINEQYAKVDKIEVVVDGKVIYSTINQFPNGLTYETPAIKVDLNIPENAKRLQLKSYAGEKTWGDEVV
YADAKFTAKGDFV

The query sequence (length=173) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2vng:B 173 173 1.0000 1.0000 1.0000 4.26e-127 2vng:A, 2vno:A, 2vno:B, 2vnr:A
2 2ygm:B 352 164 0.5491 0.2699 0.5793 1.81e-63 2ygl:A, 2ygl:B, 2ygm:A
3 2ygm:B 352 161 0.5202 0.2557 0.5590 1.22e-58 2ygl:A, 2ygl:B, 2ygm:A
4 7jrl:A 457 166 0.2948 0.1116 0.3072 4.66e-06 7jrm:A
5 2vmh:A 147 168 0.2948 0.3469 0.3036 0.001 2vmg:A, 2vmi:A
6 6rm3:LH0 184 125 0.1734 0.1630 0.2400 0.20
7 6qe8:A 183 46 0.0983 0.0929 0.3696 0.74 2qz2:A
8 4amp:A 372 56 0.0751 0.0349 0.2321 2.3
9 6x7l:A 303 53 0.0925 0.0528 0.3019 2.4 4hzo:A, 4hzp:A, 6x7m:A, 6x7n:A, 6x7o:A, 6x7p:A
10 2zt5:A 530 39 0.0694 0.0226 0.3077 3.0 2zt6:A, 2zt7:A, 2zt8:A, 2zxf:A
11 4qei:A 562 39 0.0694 0.0214 0.3077 3.2
12 5x3j:A 718 26 0.0694 0.0167 0.4615 3.2 5x3j:B, 5x3k:A, 5x3k:B
13 1gv4:A 490 64 0.1156 0.0408 0.3125 4.9 4bv6:A, 5fmh:A, 5fs8:A, 3gd3:B, 3gd3:C, 3gd3:D, 1gv4:B, 5kvi:A, 4lii:A
14 3b0g:A 538 66 0.1098 0.0353 0.2879 5.1 3b0j:A, 3b0l:A, 3b0m:A, 3b0n:A, 3vkp:A, 3vkq:A, 3vkr:A, 3vks:A, 3vkt:A, 3vlx:A, 3vly:A, 3vlz:A, 3vm0:A, 3vm1:A
15 6bcu:W 1052 55 0.1098 0.0181 0.3455 6.2 6bcu:Y, 6bcx:W, 6bcx:Y, 9f42:E, 9f43:E, 9f44:E, 9f44:F, 9f45:E, 9f45:F, 8rch:W, 8rch:Y, 8rck:Y, 8rcn:Y
16 5fs9:B 465 64 0.1156 0.0430 0.3125 6.7 4bur:A, 4bur:B, 4bur:C, 4fdc:B, 5fs6:A, 5fs6:B, 5fs7:A, 5fs7:B, 5fs9:A, 3gd3:A, 3gd4:A, 1m6i:A, 5miu:A, 5miu:B, 5miv:A, 5miv:C, 8qns:A, 8qns:G
17 7ana:AAA 475 88 0.1272 0.0463 0.2500 6.8 7ana:BBB, 7anb:AAA, 7anb:BBB
18 8d3i:A 439 64 0.1156 0.0456 0.3125 7.7 4bur:D, 8d3e:A, 8d3e:B, 8d3g:A, 8d3g:B, 8d3h:A, 8d3h:B, 8d3i:B, 8d3j:A, 8d3j:B, 8d3k:A, 8d3k:B, 8d3n:A, 8d3n:B, 8d3o:A, 8d3o:B, 3gd4:B, 5kvh:A, 5kvh:B, 8qns:D, 8qns:J
19 7arc:D 395 23 0.0636 0.0278 0.4783 8.3 7ard:D
20 8p5d:LH0 183 103 0.1445 0.1366 0.2427 9.3 8p60:LH0, 8p60:KH0, 7qca:LH0
21 4zas:A 369 60 0.0809 0.0379 0.2333 9.9 4zas:B, 4zas:D, 4zas:E, 4zas:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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