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BioLiP
>protein
ESPERGRKRLGIYLAHFLDHVEGHMGEIGVQRDALAEDARLGALIDRALADMAVARASLNAVLRDL

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hk5:B 66 66 1.0000 1.0000 1.0000 2.81e-41 6hk5:C, 6hk5:E, 6hk5:G, 6hk5:A, 6hk5:D, 6hk5:F, 6hk5:H
2 8unx:A 244 58 0.2879 0.0779 0.3276 1.2 7f1o:A, 7f1z:A, 7f23:A, 7f24:A, 5g53:C, 8gfv:A, 8gfw:A, 8gfx:A, 8gfy:A, 8gfz:A, 8gg0:A, 8gg1:A, 8gg2:A, 8gg3:A, 8gg4:A, 8gg5:A, 8gg6:A, 8gg7:A, 8gg8:A, 8gw8:A, 8jr9:A, 8unl:A, 8unm:A, 8unn:A, 8uno:A, 8unp:A, 8unq:A, 8unr:A, 8uns:A, 8unt:A, 8unu:A, 8unv:A, 8unw:A, 8uny:A, 8unz:A, 8uo0:A, 7vui:A, 7vuj:A
3 5b16:A 722 56 0.2727 0.0249 0.3214 6.6
4 6lxe:A 768 56 0.2727 0.0234 0.3214 7.6
5 6lxd:A 918 56 0.2727 0.0196 0.3214 7.7 9asm:A, 9asn:A, 9aso:A, 9asp:A, 9asq:A, 6v5b:A, 6v5c:A
6 8p8k:AAA 276 23 0.1515 0.0362 0.4348 9.4 8p8k:BBB, 8qrt:AAA, 8qrt:BBB, 8qrt:CCC, 8qrt:DDD, 8qs0:AAA, 8qs0:BBB, 8qs0:CCC, 8qs0:DDD
7 3gaz:A 331 55 0.2576 0.0514 0.3091 10.0 3gaz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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