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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ESKRNKPGKATGKGKPVGDKWLDDAGKDSGAPIPDRIADKLRDKEFKSFDDFRKAVWEEVSKDPELSKNLNPSNKSSVSK
GYSPFTPKNQQVGGRKVYELHHDKPISQGGEVYDMDNIRVTTPKRHIDIHRG

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1fsj:B 134 132 1.0000 0.9851 1.0000 1.17e-94 1fr2:B, 1fsj:C, 1fsj:D, 1fsj:E, 2gyk:B, 2gyk:F, 2gze:B, 2gzf:B, 2gzg:B, 2gzi:B, 2gzj:B, 2gzj:F, 1v13:A, 1v13:B, 1v14:A, 1v14:B, 1v14:C, 1v14:D, 1v15:B, 1v15:D, 1v15:C
2 3u43:B 132 131 0.8106 0.8106 0.8168 5.58e-75
3 1v15:A 106 129 0.7955 0.9906 0.8140 2.08e-66
4 3fbd:A 132 131 0.6894 0.6894 0.6947 8.75e-62 7cei:B, 3fbd:D, 3gjn:B, 3gjn:C, 3gkl:A, 2ivh:A, 2jaz:B, 2jaz:D, 2jb0:B, 2jbg:B, 2jbg:D, 1m08:A, 1m08:B, 1mz8:B, 1mz8:D, 1pt3:A, 1pt3:B, 3zfk:A, 3zfk:B, 1zns:A, 1znv:B, 1znv:D
5 4qko:D 133 129 0.4924 0.4887 0.5039 1.83e-43 4qko:B, 4qko:F, 4qko:H
6 7d5s:BE 865 60 0.1364 0.0208 0.3000 1.6 7ajt:UU, 6ke6:BE, 6lqp:BE, 6lqq:BE, 6lqu:BE, 7suk:LT, 5wlc:LT, 6zqa:UU, 6zqb:UU, 6zqc:UU
7 2wym:A 303 69 0.1591 0.0693 0.3043 1.8 2wym:B, 2wym:C, 2wym:D, 2wym:E, 2wym:F
8 3j5s:D 554 82 0.1818 0.0433 0.2927 3.8
9 1wzc:B 244 68 0.1667 0.0902 0.3235 5.4 1wzc:A
10 5dst:C 317 42 0.1212 0.0505 0.3810 8.5 5dst:A, 5dst:B, 5dst:D, 5dst:E, 5dst:F, 5dst:G, 5dst:H, 5dst:I, 5dst:J, 5dst:K, 5dst:L, 5dst:M, 5dst:N, 5dst:O, 4x41:A
11 8yh9:J 242 13 0.0682 0.0372 0.6923 9.1
12 6ujf:A 301 155 0.2879 0.1262 0.2452 9.4
13 8w1p:G 340 13 0.0682 0.0265 0.6923 9.9 8ydb:J, 8yeo:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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