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BioLiP
>protein
ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3clc:B 77 76 0.9868 0.9740 0.9868 8.82e-48 3clc:A, 3clc:C, 3clc:D, 4i8t:A, 4ivz:A, 4ivz:B, 4ivz:E, 4ivz:F, 4iwr:A, 4iwr:B, 4iwr:E, 4iwr:F, 3s8q:A, 3s8q:B, 3ufd:A, 3ufd:B, 3ufd:E, 3ufd:F, 4x4b:A, 4x4b:B, 4x4b:C, 4x4b:D, 4x4c:A, 4x4c:B, 4x4c:C, 4x4c:D, 4x4d:A, 4x4d:B, 4x4d:C, 4x4d:D, 4x4e:A, 4x4e:B, 4x4e:C, 4x4e:D, 4x4f:A, 4x4f:B, 4x4f:C, 4x4f:D, 4x4g:A, 4x4g:B, 4x4g:C, 4x4g:D, 4x4h:A, 4x4h:B, 4x4h:C, 4x4h:D, 4x4i:A, 4x4i:B, 4x4i:C, 4x4i:D
2 1b0n:A 103 52 0.2763 0.2039 0.4038 3.71e-04 3zkc:A, 3zkc:B
3 1y9q:A 178 62 0.2368 0.1011 0.2903 0.003
4 4ryk:A 295 58 0.2632 0.0678 0.3448 0.005
5 2qfc:A 284 60 0.2500 0.0669 0.3167 0.079 2qfc:B, 3u3w:A, 3u3w:B
6 2xiu:A 66 46 0.2368 0.2727 0.3913 0.27
7 7o81:AU 110 34 0.1974 0.1364 0.4412 0.76 6zvh:i
8 7nrd:Sh 120 38 0.1842 0.1167 0.3684 2.3 6zvi:T
9 1v9l:A 418 36 0.1579 0.0287 0.3333 3.6 1v9l:B, 1v9l:C, 1v9l:D, 1v9l:E, 1v9l:F
10 6rtg:A 503 69 0.2895 0.0437 0.3188 3.7
11 1pvw:A 219 66 0.2500 0.0868 0.2879 4.5 1pvw:B, 1pvy:A, 1pvy:B, 1snn:A, 1snn:B
12 4ij6:A 207 53 0.1842 0.0676 0.2642 7.2 4ij6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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