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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ESFAFGAVVERRDELDGRPWISYPVRVVADTPELVAVHLSHGTRLTFGDDPFSWGPHPWQLFGDRWQSAGILQLHRPGRG
HSVWVLRDADTGAFREWYVNVEAPWRRTPTGFSTLDHEIDLVVPADSRTFRWKDVEKFEERARIGHFSPEEATAIRAEAA
DVAREIAAGEQWWDTRWSRWEPPAGWNALLQSFETEGS

The query sequence (length=198) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zdm:A 198 198 1.0000 1.0000 1.0000 2.10e-142 5zdn:A
2 3cbt:A 210 176 0.2929 0.2762 0.3295 7.36e-16 3exm:A
3 8hl1:AEFG 725 25 0.0556 0.0152 0.4400 4.0 8hl2:AEFG, 8hl3:AEFG, 8hl4:AEFG
4 8q7h:A 1403 33 0.0606 0.0086 0.3636 5.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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