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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ERVLIVNADDFGLSKGQNYGIIEACRNGVVTSTTALVNGAAIDHAAQLGRSTPELAVGMHFVLTLGEPLSAMPGLTRDGR
LGKWIWQQAEEDSLPLEEIAHELACQYHRFVELFGHEPTHIDSHHHVHMFAQIYPIVAAFAREKGIALRIDRQVAAQSGL
DQQAARSSAGFSSEFYGEAVSEELFLQTLDASIARGERSLEVMCHPAYVDRIIMGSAYCYPRLDELDVLTAASLKAAVAD
RGYRLGTYRDVLE

The query sequence (length=253) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vi8:B 253 253 1.0000 1.0000 1.0000 0.0 7vi8:A
2 8jqe:A 296 286 0.2569 0.2196 0.2273 7.65e-12 8jqe:B
3 2e67:A 263 136 0.1581 0.1521 0.2941 0.003 2e67:B, 2e67:C, 2e67:D, 2e67:E, 2e67:F
4 5jhq:D 463 46 0.0632 0.0346 0.3478 1.9 6cf6:B, 6cf6:A, 5hkp:A, 5hkp:B, 5jhq:A, 5jhq:B, 5jhq:C, 6urq:B, 6urq:A
5 7og4:AV 349 83 0.0830 0.0602 0.2530 2.2 7a5f:V6, 7a5g:V6, 7a5i:V6, 7a5k:V6, 3j9m:AV, 6nu2:AV, 6nu3:AV, 6zs9:AV, 6zsa:AV, 6zsb:AV, 6zsc:AV, 6zsd:AV, 6zse:AV, 6zsg:AV
6 8k2a:Sc 385 85 0.0830 0.0545 0.2471 2.8 8any:AV, 8csq:V, 8csr:V, 8css:V, 8cst:V, 8csu:V, 7l08:AV, 8oir:AV, 8ois:AV, 7p2e:V, 7pnx:V, 7pny:V, 7pnz:V, 7po0:V, 7po1:V, 7po2:V, 7po3:V, 7qi4:AV, 7qi5:AV, 7qi6:AV, 8qrk:V, 8qrl:V, 8qrm:V, 8qrn:V, 6rw4:V, 6rw5:V, 6vlz:AV, 6vmi:AV, 8xt0:Sc, 8xt2:Sc, 6zm5:AV, 6zm6:AV
7 7y85:D 652 72 0.0632 0.0245 0.2222 5.8 7xc7:D, 7y83:D
8 8umo:K 113 37 0.0553 0.1239 0.3784 6.3
9 8d9g:A 679 72 0.0632 0.0236 0.2222 6.4 7xss:C, 7xt4:C
10 3vpp:B 122 28 0.0474 0.0984 0.4286 7.6 3vpp:A
11 5h06:B 499 90 0.0870 0.0441 0.2444 8.8 5h05:A, 5h05:B, 5h05:C, 5h05:D, 5h06:A, 5h06:C, 5h06:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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