Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKIL
ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAA
TRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALH
IDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFA
QHLLGHKSDTMASQFRDDRGREWDKIEIK

The query sequence (length=349) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5j0n:F 356 349 0.9971 0.9775 0.9971 0.0 5j0n:E, 5j0n:G, 5j0n:H, 1p7d:A, 1p7d:B, 2wcc:3, 1z19:B, 1z19:A, 1z1b:B, 1z1b:A, 1z1g:A, 1z1g:D, 1z1g:B, 1z1g:C
2 7vrs:A 444 114 0.0974 0.0766 0.2982 0.62 7vrs:B
3 4ic5:A 210 94 0.0745 0.1238 0.2766 1.1 4ic5:B, 4ic5:C
4 4xey:B 359 55 0.0487 0.0474 0.3091 1.2 7n9g:C, 4wa9:A
5 3r2q:A 202 70 0.0487 0.0842 0.2429 2.1
6 6gjc:A 2770 138 0.1203 0.0152 0.3043 2.2 6gjc:B, 6gjc:C, 6gjc:D, 6gjc:E, 6gjc:F
7 5fks:A 731 56 0.0573 0.0274 0.3571 2.6
8 3ryb:A 563 160 0.1146 0.0710 0.2500 2.6 3drf:A, 3drg:A, 3drh:A, 3dri:A, 3drj:A, 3drk:A, 3rya:A
9 6d7j:A 799 77 0.0659 0.0288 0.2987 3.2 6d7j:D
10 6wsb:A 489 62 0.0516 0.0368 0.2903 3.9 6wsb:B
11 3uo1:H 216 81 0.0688 0.1111 0.2963 5.7 3uyr:H, 3v4u:H, 3v52:H
12 8ttc:D 299 75 0.0716 0.0836 0.3333 8.9 8r02:D, 8r0j:C
13 8p7e:A 309 53 0.0487 0.0550 0.3208 9.1 8p7e:B, 8p8f:A, 8p8f:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218