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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ERPPRRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKKHCE
ALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDV
LTIKTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELL
GTKEIEEYKKSVVSLKNEEENENSISQYKESVKRLLNVT

The query sequence (length=279) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ois:AB 279 279 1.0000 1.0000 1.0000 0.0 7a5i:b6, 7a5k:b6, 8k2a:Sk, 7po2:1, 7qi4:A1, 7qi5:A1, 7qi6:A1, 8xt0:Sk, 8xt2:Sk
2 3jd5:k 275 274 0.8638 0.8764 0.8796 0.0 8oin:AB, 8oip:AB, 6ydw:Ak
3 7pnt:1 278 278 0.8208 0.8237 0.8237 6.93e-177 7pnu:1
4 6xyw:Bz 123 74 0.0896 0.2033 0.3378 1.59e-04
5 8om2:Y 272 105 0.1147 0.1176 0.3048 0.001 8d8k:Y, 8d8l:Y, 5mrc:YY, 5mre:YY, 5mrf:YY, 8om3:Y, 8om4:Y
6 8v9k:z 364 52 0.0645 0.0495 0.3462 2.6
7 6uz7:AE 164 109 0.1111 0.1890 0.2844 5.2 5it7:EE
8 2etz:A 108 52 0.0502 0.1296 0.2692 5.8 2eu0:A
9 6xyw:At 105 77 0.0753 0.2000 0.2727 6.5
10 8dfv:A 1664 69 0.0573 0.0096 0.2319 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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