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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ERPPEETLSLWKGEQARLKARVVDRDTEAWQRDPSFSGLQKVGGVDVSFVSVRACASLVVLSYPELKVVYEDSRMVGLKA
PYVSGFLAFREVPFLVELVQRLQEKEPDLMPQVVLVDGNGVLHQRGFGVACHLGVLTELPCIGVAMKLLQVDGLENNALH
KEKIVLLQAGGDTFPLIGSSGTVLGMALRSHDHSTKPLYVSVGHRISLEVAVRLTHHCCRFRIPEPIRQADIRSREYIRR
TLG

The query sequence (length=243) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ozj:B 250 246 0.9959 0.9680 0.9837 3.16e-177 6ozj:A, 6ozk:A, 6ozk:B, 6ozl:A, 6ozl:B, 6ozm:A, 6ozm:B, 6ozn:A, 6ozn:B, 6ozo:A, 6ozo:B, 6ozp:A, 6ozp:B, 6ozq:A, 6ozq:B, 6ozr:A, 6ozr:B, 6ozs:A, 6ozs:B
2 6ozi:A 244 243 0.3909 0.3893 0.3909 5.68e-51 6ozh:A, 6ozh:C, 6ozh:B, 6ozh:D, 6ozi:B
3 3goc:A 228 205 0.2963 0.3158 0.3512 6.41e-24 3goc:B
4 6ozf:B 225 236 0.2881 0.3111 0.2966 2.81e-22 4b20:A, 4b20:B, 6ozf:A, 6ozg:A, 6ozg:B, 2w35:A, 2w35:B, 2w36:A, 2w36:B
5 6qec:A 65 47 0.0782 0.2923 0.4043 0.68 5lxu:A
6 2y7j:A 284 26 0.0453 0.0387 0.4231 2.0 2y7j:B, 2y7j:C, 2y7j:D
7 2vcz:C 177 49 0.0494 0.0678 0.2449 2.9
8 4ec0:B 200 49 0.0494 0.0600 0.2449 3.0 5ais:A, 5ais:B, 5ais:C, 5ais:D, 5aiv:A, 5aiv:B, 5aiv:C, 5aiv:D, 5aix:B, 5aix:C, 2cvd:A, 2cvd:B, 2cvd:C, 2cvd:D, 4ec0:A, 4edy:A, 4edy:B, 4edz:A, 4edz:B, 4edz:C, 4edz:D, 3ee2:A, 4ee0:A, 4ee0:B, 1iyh:A, 1iyh:B, 1iyh:C, 1iyh:D, 1iyi:A, 1iyi:B, 1iyi:C, 1iyi:D, 7jr6:A, 7jr6:B, 7jr8:A, 7jr8:B, 3kxo:A, 3kxo:B, 6n4e:A, 1v40:A, 1v40:B, 1v40:C, 1v40:D, 2vcq:A, 2vcq:B, 2vcq:C, 2vcq:D, 2vcw:A, 2vcw:B, 2vcw:D, 2vcx:A, 2vcx:B, 2vcx:C, 2vcx:D, 2vcz:A, 2vcz:B, 2vcz:D, 2vd0:A, 2vd0:B, 2vd0:D, 2vd1:A, 2vd1:B, 2vd1:C, 2vd1:D, 3vi5:A, 3vi5:B, 3vi5:C, 3vi5:D, 3vi7:A, 3vi7:B, 3vi7:C, 3vi7:D, 6w58:A, 6w58:B, 6w8h:A, 6w8h:C, 5ywe:A, 5ywe:B, 5ywe:C, 5ywe:D, 5ywx:A, 5ywx:B, 5ywx:C, 5ywx:D, 5yx1:A, 5yx1:B, 5yx1:C, 5yx1:D, 6ztc:A, 6ztc:B
9 7r50:A 473 42 0.0617 0.0317 0.3571 4.6 7r50:D, 7r50:E, 7r50:H, 7r50:I, 7r50:L, 7r50:M, 7r50:N, 7r50:P
10 2ebs:B 771 49 0.0741 0.0233 0.3673 6.1 2ebs:A
11 8r9b:A 301 27 0.0535 0.0432 0.4815 6.7 7b5o:J, 7b5q:J, 8orm:J, 8p4z:A, 8p4z:B, 8p6v:J, 8p6w:J, 8p6x:J, 8p6y:J, 8p6z:J, 8p70:J, 8p71:J, 8p72:J, 8p73:J, 8p74:J, 8p75:J, 8p76:J, 8p77:J, 8p78:J, 8p7l:J, 8plz:J, 8r99:A, 8r9a:A, 8r9b:B, 8r9b:C, 8r9b:D, 8r9o:A, 8r9o:B, 8r9s:A, 8r9s:B, 8r9u:A, 8r9u:B, 1ua2:A, 1ua2:B, 1ua2:C, 1ua2:D, 6xbz:J, 6xd3:J
12 8di0:B 426 45 0.0617 0.0352 0.3333 7.3
13 2d3t:C 390 85 0.0782 0.0487 0.2235 8.9 2d3t:D, 1wdk:C, 1wdk:D, 1wdl:C, 1wdl:D, 1wdm:C, 1wdm:D
14 1unl:A 292 28 0.0494 0.0411 0.4286 9.3 4au8:A, 4au8:B, 3o0g:B, 1ung:A, 1ung:B, 1unh:A, 1unh:B, 7vdp:A, 7vdp:B, 7vdq:A, 7vdq:B, 7vdr:A, 7vdr:B, 7vds:A
15 6gu2:A 294 28 0.0453 0.0374 0.3929 9.8 6gu3:A, 6gu4:A, 6gu6:A, 6gu7:A, 5hq0:A, 5lqf:A, 5lqf:D, 4y72:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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