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BioLiP
>protein
ERPPEETLSLWKGEQARLKARVVDRDTEAWQRDPSFSGLQKVGGVDVSFVKSVRACASLVVLSYPELKVVYEDSRMVGLK
APYVSGFLAFREVPFLVELVQRLQEKEPDLMPQVVLVDGNGVLHQRGFGVACHLGVLTELPCIGVAKKLLQVDGLENNAL
HKEKIVLLQAGGDTFPLIGSSGTVLGMALRSHDHSTKPLYVSVGHRISLEVAVRLTHHCCRFRIPEPIRQADIRSREYIR
RT

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ozj:B 250 244 1.0000 0.9680 0.9918 1.41e-177 6ozj:A, 6ozk:A, 6ozk:B, 6ozl:A, 6ozl:B, 6ozm:A, 6ozm:B, 6ozn:A, 6ozn:B, 6ozo:A, 6ozo:B, 6ozp:A, 6ozp:B, 6ozq:A, 6ozq:B, 6ozr:A, 6ozr:B, 6ozs:A, 6ozs:B
2 6ozi:A 244 243 0.4008 0.3975 0.3992 2.61e-51 6ozh:A, 6ozh:C, 6ozh:B, 6ozh:D, 6ozi:B
3 6ozf:B 225 236 0.2934 0.3156 0.3008 1.63e-24 4b20:A, 4b20:B, 6ozf:A, 6ozg:A, 6ozg:B, 2w35:A, 2w35:B, 2w36:A, 2w36:B
4 3goc:A 228 205 0.3140 0.3333 0.3707 2.29e-24 3goc:B
5 9bh5:CB 395 157 0.1446 0.0886 0.2229 0.95 9cai:CB
6 2y7j:A 284 26 0.0455 0.0387 0.4231 2.0 2y7j:B, 2y7j:C, 2y7j:D
7 6qec:A 65 47 0.0744 0.2769 0.3830 4.1 5lxu:A
8 7r50:A 473 42 0.0620 0.0317 0.3571 4.9 7r50:D, 7r50:E, 7r50:H, 7r50:I, 7r50:L, 7r50:M, 7r50:N, 7r50:P
9 2d3t:C 390 85 0.0785 0.0487 0.2235 5.0 2d3t:D, 1wdk:C, 1wdk:D, 1wdl:C, 1wdl:D, 1wdm:C, 1wdm:D
10 2ebs:B 771 49 0.0744 0.0233 0.3673 6.0 2ebs:A
11 8r9b:A 301 27 0.0537 0.0432 0.4815 6.6 7b5o:J, 7b5q:J, 8orm:J, 8p4z:A, 8p4z:B, 8p6v:J, 8p6w:J, 8p6x:J, 8p6y:J, 8p6z:J, 8p70:J, 8p71:J, 8p72:J, 8p73:J, 8p74:J, 8p75:J, 8p76:J, 8p77:J, 8p78:J, 8p7l:J, 8plz:J, 8r99:A, 8r9a:A, 8r9b:B, 8r9b:C, 8r9b:D, 8r9o:A, 8r9o:B, 8r9s:A, 8r9s:B, 8r9u:A, 8r9u:B, 1ua2:A, 1ua2:B, 1ua2:C, 1ua2:D, 6xbz:J, 6xd3:J
12 8di0:B 426 45 0.0620 0.0352 0.3333 7.2
13 1unl:A 292 28 0.0496 0.0411 0.4286 9.1 4au8:A, 4au8:B, 3o0g:B, 1ung:A, 1ung:B, 1unh:A, 1unh:B, 7vdp:A, 7vdp:B, 7vdq:A, 7vdq:B, 7vdr:A, 7vdr:B, 7vds:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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