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BioLiP
>protein
ERPLVFLCSGCRRPLGDSLSWVASQEDTNCILLRCVSCNVSVDKGCVLETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCL
SVEAIESYVLGS

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7sfz:A 100 100 1.0000 0.9200 0.9200 9.38e-60 7sfz:B, 7sfz:C, 7sfz:D, 7sfz:E, 7sfz:F, 7sfz:G
2 7sfz:H 84 90 0.9130 1.0000 0.9333 1.06e-51
3 5j6p:B 102 100 0.3913 0.3529 0.3600 4.58e-11 5hj0:A, 5hj0:B, 5hj0:C, 5j6p:A, 5j6p:C
4 7w6m:A 1224 48 0.1739 0.0131 0.3333 0.19 7w6m:C, 7w6m:B, 7w73:C, 7w73:A, 7y6t:B, 7y6u:A
5 6u7k:A 1064 48 0.1739 0.0150 0.3333 0.43
6 4eie:A 82 50 0.2283 0.2561 0.4200 0.92 4eif:A
7 6z1p:BL 181 64 0.2065 0.1050 0.2969 1.5
8 6vv5:A 1097 43 0.1630 0.0137 0.3488 2.2 6vv5:B, 6vv5:C
9 5jio:A 467 63 0.1957 0.0385 0.2857 2.3 5k41:A, 5k42:A, 5k44:A, 5k5c:A, 5l3k:A, 5l3k:B, 5l3k:C, 5l3k:D, 5l3k:E, 5l3k:F, 5l3k:G, 5l3k:H
10 1wyh:A 72 26 0.1413 0.1806 0.5000 2.6
11 3adp:A 310 17 0.0870 0.0258 0.4706 4.6
12 7r81:L2 90 24 0.1087 0.1111 0.4167 5.3 7olc:SK, 7old:SK, 8oo0:SK, 7z3n:SK, 7z3o:SK

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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