Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS
TDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVG
KADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEG
V

The query sequence (length=241) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2c39:D 248 241 1.0000 0.9718 1.0000 7.33e-178 4ba1:B, 4ba2:B, 2c37:B, 2c37:F, 2c37:N, 2c37:V, 2c37:X, 2c38:B, 2c38:F, 2c38:H, 2c38:J, 2c38:N, 2c38:V, 2c38:X, 2c39:B, 2c39:F, 2c39:H, 2c39:J, 2c39:L, 2c39:N, 2c39:P, 2c39:R, 2c39:T, 2c39:V, 2c39:X, 2jea:B
2 2pnz:A 236 236 0.6058 0.6186 0.6186 1.84e-107 2po0:A, 2po1:A, 2po2:A
3 3m7n:E 248 242 0.5560 0.5403 0.5537 1.07e-93 3m7n:F, 3m7n:D, 3m85:F, 3m85:D, 3m85:E
4 2wnr:B 222 219 0.4730 0.5135 0.5205 1.67e-83 2wnr:D, 2wnr:F
5 6d6q:B 241 223 0.3568 0.3568 0.3857 5.80e-57 6d6r:B
6 1r6m:A 236 239 0.3029 0.3093 0.3054 1.39e-26
7 6fsz:BB 244 227 0.2946 0.2910 0.3128 9.14e-26 4ifd:B, 5jea:B, 5k36:B, 8qcf:C
8 6d6q:F 252 232 0.3195 0.3056 0.3319 2.11e-21 6d6r:F
9 3dd6:A 244 238 0.2822 0.2787 0.2857 3.46e-21
10 5yjj:A 442 190 0.2739 0.1493 0.3474 3.23e-20 5yjj:B, 5yjj:C, 5yjj:D, 5yjj:E, 5yjj:F
11 5yjj:A 442 170 0.1950 0.1063 0.2765 1.97e-04 5yjj:B, 5yjj:C, 5yjj:D, 5yjj:E, 5yjj:F
12 4aim:A 698 224 0.2946 0.1017 0.3170 2.12e-18 4aid:A, 4aid:B, 4aid:C, 4am3:A, 4am3:C, 4am3:B
13 4aim:A 698 185 0.1909 0.0659 0.2486 1.47e-05 4aid:A, 4aid:B, 4aid:C, 4am3:A, 4am3:C, 4am3:B
14 3gme:A 482 181 0.2365 0.1183 0.3149 3.70e-17
15 7ogk:A 695 184 0.2407 0.0835 0.3152 1.18e-16 3gcm:A, 3gcm:B, 3gcm:C, 3h1c:A, 3h1c:B, 3h1c:C, 3h1c:K, 3h1c:G, 3h1c:I, 3h1c:M, 3h1c:O, 3h1c:R, 3h1c:T, 3h1c:V, 3h1c:X, 7ogk:B, 7ogk:C, 7ogm:L, 7ogm:N, 7ogm:O
16 8wx0:A 597 225 0.2822 0.1139 0.3022 9.68e-16 8wx0:B, 8wx0:C
17 7ld5:A 587 211 0.2739 0.1124 0.3128 4.82e-15 7ld5:B, 7ld5:C
18 1e3p:A 645 207 0.2324 0.0868 0.2705 6.85e-12
19 3m85:I 259 107 0.1411 0.1313 0.3178 3.66e-09 3m7n:I, 3m7n:G, 3m7n:H, 3m85:G, 3m85:H
20 4ba2:A 274 237 0.2241 0.1971 0.2278 1.53e-08 2c37:I, 2c37:U, 2c38:G, 2c38:I, 2c38:U, 2c38:W, 2jea:A
21 2pnz:B 267 95 0.1162 0.1049 0.2947 8.39e-08
22 6d6q:C 265 106 0.1079 0.0981 0.2453 1.87e-06 6d6r:C
23 4a6t:C 455 29 0.0456 0.0242 0.3793 3.1 4a6r:A, 4a6r:B, 4a6t:A, 4a6t:B, 4a6t:D, 4a72:C, 4a72:D, 4ah3:A, 4ah3:B, 4ah3:D, 4ah3:C, 4ba5:A, 4ba5:B, 7q9x:AAA, 7q9x:BBB, 7q9x:CCC, 7q9x:DDD, 7q9z:AAA, 7q9z:BBB, 6s4g:A, 6s4g:B, 6s4g:C, 6s4g:D, 6snu:A, 6snu:B, 6snu:C, 6snu:D
24 8gxf:B 187 45 0.0581 0.0749 0.3111 3.2 8gxf:A, 8gxf:C, 8gxf:D
25 1fi6:A 92 42 0.0498 0.1304 0.2857 4.2
26 3j9y:w 639 155 0.1743 0.0657 0.2710 4.5 5kcs:1w
27 1k68:A 140 88 0.0954 0.1643 0.2614 7.0 1k68:B
28 3el3:A 417 25 0.0498 0.0288 0.4800 8.3 3el3:B
29 3dbg:A 379 25 0.0498 0.0317 0.4800 8.5 3dbg:B
30 6pib:A 245 67 0.0788 0.0776 0.2836 9.5 9eng:A, 6ph9:A, 6pj3:A, 8qk2:A, 8qk5:A, 8qka:A, 7ss6:A, 7ss7:A, 6wii:A
31 8q87:A 857 92 0.0996 0.0280 0.2609 9.8 6d9j:9, 6gz3:Ct, 6gz4:Ct, 6gz5:Ct, 3j7p:4, 7ls1:m, 7ls2:m, 6mtd:v, 6mte:v, 7oyc:v2, 4v6x:Az, 8xsx:CB, 6z6m:CB, 6z6n:CB

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218