Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5t01:A 62 58 1.0000 0.9355 1.0000 1.76e-33 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
2 5vpe:D 67 58 0.8621 0.7463 0.8621 4.27e-29 5vpe:B, 5vpf:B, 5vpf:D
3 5fv8:E 37 32 0.5345 0.8378 0.9688 5.75e-15
4 1t2k:D 61 53 0.3966 0.3770 0.4340 7.95e-07
5 1ysa:C 57 50 0.3621 0.3684 0.4200 8.18e-04 1dgc:A, 2dgc:A, 1ysa:D
6 7x5e:B 106 38 0.2931 0.1604 0.4474 0.001 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
7 1dh3:A 55 35 0.2759 0.2909 0.4571 0.13 1dh3:C, 5zk1:A, 5zko:A, 5zko:C
8 1gd2:E 65 56 0.3276 0.2923 0.3393 0.19 1gd2:F, 1gd2:G, 1gd2:H
9 6iox:A 339 46 0.2759 0.0472 0.3478 1.5 6iox:B
10 6zz6:B 423 56 0.2759 0.0378 0.2857 1.7
11 6co9:A 295 27 0.2069 0.0407 0.4444 2.4 6coj:A
12 7s7b:F 352 27 0.1897 0.0312 0.4074 2.7 7s7b:B, 7s7c:B
13 5jk5:A 400 31 0.1897 0.0275 0.3548 5.5 5jk5:B, 5jk6:A, 5jk6:B, 5jk8:A, 5jk8:B
14 5e9a:B 684 33 0.1724 0.0146 0.3030 5.5 5e9a:A, 5e9a:C, 5e9a:D, 5e9a:E, 5e9a:F
15 1m1j:C 390 46 0.2069 0.0308 0.2609 7.1 1m1j:F
16 4irq:C 249 20 0.1724 0.0402 0.5000 8.6 4irp:A, 4irq:A, 4irq:B, 4irq:D
17 8k8c:A 60 51 0.3276 0.3167 0.3725 9.1 8k8c:B, 1nwq:A, 1nwq:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218