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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ERILKKQPAPVRALTIHPLRRYESSIYDTPIPAYVIKHSSDGVTIDIATSELADGQSGSTIQPFESVPAQNLTLFKHDFT
FGHLADTTDKKFVEVFGVLENRADDSDFQSPDMIIETETGHVYVVEFTTTMGDANSADLAARNKIAKYEIACLDRSAIKP
ISLYIIAVHFNGVVSNLDLSDEEVNEIVFRFRLARDIFEELRE

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6qw5:A 204 203 1.0000 0.9951 1.0000 1.63e-150 6qvv:A, 6qvv:B, 6qw0:A, 6qw0:B, 6qw5:B
2 8r6y:A 1991 184 0.3054 0.0311 0.3370 2.39e-18 8as7:A, 8r6w:A, 6xya:B
3 7alp:U 1935 183 0.2906 0.0305 0.3224 6.75e-18
4 8asd:A 1826 183 0.3005 0.0334 0.3333 9.57e-18
5 8asb:A 1715 183 0.3005 0.0356 0.3333 1.05e-17 8as6:A, 8asg:A, 8r6u:A
6 6eoa:A 193 68 0.1084 0.1140 0.3235 0.20
7 7zpk:C 233 59 0.0837 0.0730 0.2881 0.84 3adl:A, 5n8l:A, 5n8m:A
8 7uab:A 481 38 0.0640 0.0270 0.3421 2.2 7uab:D
9 5zho:A 162 56 0.0887 0.1111 0.3214 2.3
10 5c2v:D 770 58 0.0887 0.0234 0.3103 2.5 5c2v:A, 5c2w:A, 5c2w:D
11 8jwf:A 1204 69 0.0985 0.0166 0.2899 3.6 8jwg:A, 8jwi:A
12 8f5o:C 1179 20 0.0493 0.0085 0.5000 8.4 8f5p:C
13 1s49:A 588 61 0.0837 0.0289 0.2787 8.6
14 3tts:A 675 43 0.0542 0.0163 0.2558 8.8 3tts:B, 3tts:C, 3tts:D, 3tts:E, 3tts:F, 3tty:A, 3tty:B, 3tty:C, 3tty:D, 3tty:E, 3tty:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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