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BioLiP
>protein
ERATADTSPERLAAIAKDALGALNDVILKHGVTYPEYRVFKQWLIDVGEGGEWPLFLDVFIEHSVEEVLARSRKGTMGSI
EGPYYIENSPELPSKCTLPMREEDEKITPLVFSGQVTDLDGNGLAGAKVELWHADNDGYYSQFAPHLPEWNLRGTIIADE
EGRYEITTIQPAPYQIPTDGPTGQFIEAQNGHPWRPAHLHLIVSAPGKESVTTQLYFKGGEWIDSDVASATKPELILDPK
TGDDGKNYVTYNFVLDPA

The query sequence (length=258) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3hgi:A 258 258 1.0000 1.0000 1.0000 0.0 3hhx:A, 3hhy:A, 3hj8:A, 3hjq:A, 3hjs:A, 3hkp:A, 3i4v:A, 3i4y:A, 3i51:A
2 2boy:A 253 251 0.4690 0.4783 0.4821 1.18e-77 2boy:B, 2boy:C, 2boy:D, 2boy:E, 2boy:F, 2boy:G, 2boy:H
3 3o32:A 256 251 0.4109 0.4141 0.4223 9.65e-63 3o32:B, 3o5u:A, 3o5u:B, 3o6j:A, 3o6j:B, 3o6r:A, 3o6r:B, 1s9a:A, 1s9a:B
4 3th1:A 246 247 0.3488 0.3659 0.3644 3.76e-53 3th1:B, 3th1:C
5 5vxt:B 312 194 0.2868 0.2372 0.3814 1.60e-33 5td3:A, 5td3:B, 5vxt:A
6 5umh:B 310 274 0.3488 0.2903 0.3285 2.98e-33 5umh:A
7 2xsr:A 309 234 0.3023 0.2524 0.3333 5.91e-33 2xsu:A, 2xsv:A
8 1dlm:A 309 239 0.3101 0.2589 0.3347 5.46e-32 1dlm:B, 1dlq:A, 1dlq:B, 1dlt:A, 1dlt:B, 1dmh:A, 1dmh:B
9 2azq:A 309 162 0.2481 0.2071 0.3951 8.38e-31
10 3n9t:A 286 239 0.2829 0.2552 0.3054 3.72e-30
11 1tmx:A 292 163 0.2132 0.1884 0.3374 1.24e-26 1tmx:B
12 4ilv:B 157 179 0.1977 0.3248 0.2849 1.57e-12 4ilt:A, 4ilt:B, 4ilt:C, 4ilt:D, 4ilv:A
13 3lkt:M 238 135 0.1628 0.1765 0.3111 9.93e-11 3lkt:N, 3lkt:O, 3lkt:P, 3lkt:Q, 3lkt:R, 3lmx:M, 3lmx:N, 3lmx:O, 3lxv:M, 3lxv:N, 3lxv:O, 3mfl:M, 3mfl:N, 3mfl:O, 3mi1:M, 3mi1:N, 3mi1:O, 3mi5:M, 3mi5:N, 3mi5:O, 3mi5:P, 3mi5:Q, 3mi5:R, 3mv4:M, 3mv4:N, 3mv4:O, 3mv6:M, 3mv6:N, 3mv6:O, 2pcd:M, 2pcd:N, 2pcd:O, 2pcd:P, 2pcd:Q, 2pcd:R, 3pca:M, 3pca:N, 3pca:O, 3pca:P, 3pca:Q, 3pca:R, 3pcb:M, 3pcb:N, 3pcb:O, 3pcb:P, 3pcb:Q, 3pcb:R, 3pcc:M, 3pcc:N, 3pcc:O, 3pcc:P, 3pcc:Q, 3pcc:R, 3pcd:M, 3pcd:N, 3pcd:O, 3pcd:P, 3pcd:Q, 3pcd:R, 3pce:M, 3pce:N, 3pce:O, 3pce:P, 3pce:Q, 3pce:R, 3pcf:M, 3pcf:N, 3pcf:O, 3pcf:P, 3pcf:Q, 3pcf:R, 3pcg:M, 3pcg:N, 3pcg:O, 3pcg:P, 3pcg:Q, 3pcg:R, 3pch:M, 3pch:N, 3pch:O, 3pch:P, 3pch:Q, 3pch:R, 3pci:M, 3pci:N, 3pci:O, 3pci:P, 3pci:Q, 3pci:R, 3pcj:M, 3pcj:N, 3pcj:O, 3pcj:P, 3pcj:Q, 3pcj:R, 3pck:M, 3pck:N, 3pck:O, 3pck:P, 3pck:Q, 3pck:R, 3pcl:M, 3pcl:N, 3pcl:O, 3pcl:P, 3pcl:Q, 3pcl:R, 3pcm:M, 3pcm:N, 3pcm:O, 3pcm:P, 3pcm:Q, 3pcm:R, 3pcn:M, 3pcn:N, 3pcn:O, 3pcn:P, 3pcn:Q, 3pcn:R, 3t63:M, 3t63:N, 3t63:O, 3t67:M, 3t67:N, 3t67:O, 4who:B, 4who:D, 4who:F, 4whp:F, 4whp:D, 4whp:B, 4whq:F, 4whq:D, 4whq:B, 4whr:D, 4whr:B, 4whr:F, 4whs:F, 4whs:D, 4whs:B, 1ykk:B, 1ykk:D, 1ykk:F, 1ykk:H, 1ykk:J, 1ykk:L, 1ykl:B, 1ykl:D, 1ykl:F, 1ykl:H, 1ykl:J, 1ykl:L, 1ykm:B, 1ykm:D, 1ykm:F, 1ykm:H, 1ykm:J, 1ykm:L, 1ykn:B, 1ykn:D, 1ykn:F, 1ykn:H, 1ykn:J, 1ykn:L, 1yko:B, 1yko:D, 1yko:F, 1yko:H, 1yko:J, 1yko:L, 1ykp:B, 1ykp:D, 1ykp:F, 1ykp:H, 1ykp:J, 1ykp:L
14 2bum:B 238 122 0.1512 0.1639 0.3197 4.42e-09 2buq:B, 2bur:B, 2but:B, 2buu:B, 2buv:B, 2buw:B, 2bux:B, 2buy:B, 2buz:B, 2bv0:B, 1eo2:B, 1eo9:B, 1eoa:B, 1eob:B, 1eoc:B
15 5vg2:A 204 149 0.1550 0.1961 0.2685 3.63e-04 6bdj:A, 6bdj:U, 5vg2:U, 5vg2:B, 5vg2:C
16 2buq:A 202 135 0.1357 0.1733 0.2593 2.0 2buu:A, 2buy:A, 2buz:A
17 8hvc:A 602 98 0.1047 0.0449 0.2755 2.4 8hvb:A, 8hvd:A
18 4y4m:F 262 112 0.0969 0.0954 0.2232 2.8 4y4m:A, 4y4m:B, 4y4m:C, 4y4m:D, 4y4m:E, 4y4m:G, 4y4m:H
19 3ugt:C 427 50 0.0659 0.0398 0.3400 3.4 4eo4:A, 4eo4:B, 4eo4:C, 4eo4:D, 3ugq:A, 3ugt:A, 3ugt:B, 3ugt:D, 3uh0:A, 4yye:A, 4yye:B
20 7zw0:sh 776 39 0.0581 0.0193 0.3846 3.9
21 4mr0:A 456 93 0.1008 0.0570 0.2796 4.0 4mr0:B, 3zpp:A
22 6xr5:D 393 110 0.1008 0.0662 0.2364 4.9 6xr5:A, 6xr5:B, 6xr5:E, 6xr5:H
23 3lxv:A 200 130 0.1279 0.1650 0.2538 5.1 3lxv:B, 3lxv:C, 3mfl:A, 3mfl:B, 3mfl:C, 3mi5:A, 3mi5:B, 3mi5:C, 3mi5:D, 3mi5:E, 3mi5:F, 3pcb:F, 3pce:C, 3pce:E, 3pcf:A, 3pcf:B, 3pcf:C, 3pcf:D, 3pcf:E, 3pcf:F, 3pcg:C, 3pcg:D, 3pch:A, 3pch:B, 3pch:C, 3pch:D, 3pch:E, 3pci:A, 3pci:B, 3pci:C, 3pci:D, 3pci:E, 3pci:F, 3pcl:A, 3pcl:F, 3pcm:F, 3pcn:A, 3pcn:C, 3pcn:D, 3pcn:F, 3t67:A, 3t67:B, 3t67:C, 4who:A, 4whp:C, 4whq:A, 4whq:E, 4whq:C, 4whr:A, 4whr:E, 4whr:C, 4whs:A, 4whs:E, 4whs:C
24 7ebk:A 183 35 0.0504 0.0710 0.3714 5.6 7ebj:A
25 5ts5:A 483 36 0.0504 0.0269 0.3611 7.7 4e0v:A, 4e0v:B, 5ts5:B, 5ts5:C, 5ts5:D
26 8h2w:B 984 77 0.0891 0.0234 0.2987 9.9 8h2w:A, 5nz8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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