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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EQYWRFKLMTEGGCNQNEATRLITVLKRSINKLFENDNFCNRLSSYMAYGFGAAEEWIKKQQILSNIQPLTPNIFGAAIT
FGKSPVVKLLKQNAREICESILMDEPNLKQVEYIFRLLALQVQETYSGEQAEKLYECIRDKKPIPSKFEEILLPIVNRIK
ENHTEILNESKRNHLGVTIQLNDPYSFSTKNSFCIWFSNNPNSAMPKKIKDILEERAKQNAPGVTKLVYSRACLTKKENT
NFVQWAKENGITLLDFDELKCQGEDLELWNLAQAELKAMREGKGGNPAAASDLVRWISGVIGDVPIAYVDADMPMLTGNK
SIKSEEVYAGHPVLLNMGSALVKDGVNLPMENVAFNTDIINFTGECKDRSIAIKRIAQSLIGNYLHVTERISKSGNPELK
RLGLMPGYHQLLKDCEENNNKLSLPMLRKALTQAHSNLSSYVRFIGVQRFAEMVGAPEDAPLFQEALQQGNTIVLTNALV
AYLVHGMDNVSRLNSSEKENLIKKYLGTQLSLLYKPLVMEFSGPCAVTREILPLLPTGEPTRYIENLKQPDAQILRVLQT
HACVAGKTNFTSDNIPNWITSSEELSWMPSE

The query sequence (length=591) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xgx:A 607 601 1.0000 0.9736 0.9834 0.0 7xgx:B
2 2wzf:A 515 447 0.2132 0.2447 0.2819 3.63e-33
3 3jsz:A 520 448 0.2234 0.2538 0.2946 2.89e-32 3jt1:A, 2wzg:A
4 5xvv:B 459 94 0.0440 0.0566 0.2766 0.50 5xvv:A, 5xvv:C, 5xvx:A, 5xw0:A, 5xwc:A
5 6zdu:A 693 62 0.0372 0.0317 0.3548 0.88 6zdq:A, 6zdu:B
6 6f0k:C 445 49 0.0254 0.0337 0.3061 2.6
7 1b94:A 244 43 0.0288 0.0697 0.3953 3.8 1az0:A, 1az0:B, 2b0d:A, 2b0d:B, 2b0e:A, 2b0e:B, 1b94:B, 1b95:A, 1b95:B, 1b96:A, 1b96:B, 1b97:A, 1b97:B, 1bgb:A, 1bgb:B, 1bss:A, 1bss:B, 1bsu:A, 1bsu:B, 1bua:A, 1bua:B, 1eo3:A, 1eo3:B, 1eo4:A, 1eo4:B, 1eon:A, 1eon:B, 1eoo:A, 1eoo:B, 1eop:A, 1eop:B, 5f8a:A, 5f8a:B, 2ge5:A, 2ge5:B, 5hlk:A, 5hlk:B, 1rv5:A, 1rv5:B, 1rva:A, 1rva:B, 1rvb:A, 1rvb:B, 1rvc:A, 1rvc:B, 2rve:A, 2rve:B, 4rve:A, 4rve:B, 4rve:C, 1stx:A, 1stx:B, 1suz:A, 1suz:B, 1sx5:A, 1sx5:B, 1sx8:A, 1sx8:B
8 6nts:A 583 26 0.0169 0.0172 0.3846 4.2 6iur:F, 8twe:A
9 6ut5:A 395 135 0.0525 0.0785 0.2296 5.0 6ut3:C, 6ut3:D, 6ut3:E, 6ut3:F, 6ut4:A, 6ut4:B, 6ut4:C, 6ut4:D, 6ut4:E, 6ut4:F, 6ut5:B, 6ut5:C, 6ut5:D, 6ut5:E, 6ut5:F, 6ut7:A, 6ut7:B, 6ut7:C, 6ut7:D, 6ut7:E, 6ut7:F, 6ut7:H, 6ut7:I, 6ut7:J, 6ut7:K, 6ut7:L, 6ut7:M, 6ut8:A, 6ut8:B, 6ut8:C, 6ut8:D, 6ut8:E, 6ut8:F
10 1duv:G 333 75 0.0389 0.0691 0.3067 8.8 1duv:H, 1duv:I, 2otc:A, 2otc:B, 2otc:C, 2otc:D, 2otc:E, 2otc:F, 2otc:G, 2otc:H, 2otc:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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