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BioLiP
>protein
EQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSGAFLDDNELTAKIEKRISSI
MNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGGETFFPKLNLSVHPRKGMAVYFEYFY
QDQSLNELTLHGGAPVTKGEKWIATQWVRRGTYK

The query sequence (length=194) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5v7y:A 207 205 1.0000 0.9372 0.9463 2.51e-143 5hv0:A, 5hv0:B, 5hv4:A, 5iav:A, 5iav:B, 5iax:A, 5iax:B, 5v7y:B, 5v7y:D, 5v7y:C
2 2jig:A 216 196 0.3557 0.3194 0.3520 4.39e-34 3gze:A, 3gze:C
3 2jig:B 195 179 0.3351 0.3333 0.3631 1.76e-33 3gze:B, 3gze:D
4 5c5u:B 190 167 0.2835 0.2895 0.3293 5.22e-20 5c5t:A, 5c5t:B, 5c5u:A
5 6tp5:A 370 147 0.2216 0.1162 0.2925 4.62e-11 6tp5:B
6 6tp5:A 370 53 0.0928 0.0486 0.3396 1.7 6tp5:B
7 5k2o:A 585 98 0.1134 0.0376 0.2245 0.12 3e9y:A, 3ea4:A, 8et4:A, 8et5:A, 5k3s:A, 5k6q:A, 5k6r:A, 5k6t:A, 7stq:A, 7tzz:A, 7u1d:A, 7u1u:A, 7u25:A, 6u9h:A, 6u9h:B, 6u9h:H, 6u9h:I, 6u9h:L, 6u9h:M, 6u9h:P, 6u9h:Q, 6vz8:E, 6vz8:I, 6vz8:M, 6vz8:Q, 5wj1:A, 1ybh:A, 1yhy:A, 1yhz:A, 1yi0:A, 1yi1:A, 1z8n:A
8 7r50:G 424 68 0.0979 0.0448 0.2794 0.48
9 7r50:A 473 68 0.0979 0.0402 0.2794 0.50 7r50:D, 7r50:E, 7r50:H, 7r50:I, 7r50:L, 7r50:M, 7r50:N, 7r50:P
10 7r50:O 455 68 0.0979 0.0418 0.2794 0.52 7r50:B, 7r50:C, 7r50:F, 7r50:J, 7r50:K
11 6xn8:A 540 64 0.0876 0.0315 0.2656 0.54 6xn8:B
12 3jvt:C 156 51 0.1134 0.1410 0.4314 1.9 1b7t:Z, 1dfk:Z, 1dfl:Z, 1dfl:X, 2ec6:C, 1kk7:Z, 1kk8:C, 1kqm:C, 1kwo:C, 1l2o:C, 2os8:C, 2otg:C, 3pn7:C, 3pn7:F, 1qvi:Z, 1s5g:Z, 1scm:C, 1sr6:C, 3ts5:C, 3ts5:F, 3tuy:C, 3tuy:F, 1wdc:C
13 7kz7:A 424 78 0.1289 0.0590 0.3205 2.1 6f47:A, 6g8u:A, 6g8v:A
14 8k0e:A 646 73 0.1082 0.0325 0.2877 2.7 8k0f:A, 8k0m:A, 8k17:A, 8kc9:A
15 6jdc:A 269 83 0.1289 0.0929 0.3012 3.5
16 6jdb:A 290 83 0.1289 0.0862 0.3012 3.5
17 6vz8:D 531 56 0.0928 0.0339 0.3214 4.6 6vz8:H, 6vz8:L, 6vz8:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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