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BioLiP
>protein
EQRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPSN

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3orc:A 65 65 1.0000 0.9231 0.9231 4.44e-38 6cro:A
2 2pij:A 59 58 0.4167 0.4237 0.4310 1.49e-09
3 4zrn:A 309 31 0.2000 0.0388 0.3871 0.48 4zrm:A, 4zrm:B, 4zrn:B
4 6pcp:A 140 21 0.1500 0.0643 0.4286 0.93 6pcp:D, 6pcp:B, 6pcp:C, 6pcp:E, 6pcp:F
5 7ufr:A 1038 43 0.2167 0.0125 0.3023 1.8 7ufr:B, 7ufr:C, 7ufr:D, 7ufu:A, 7ufu:B, 7ufu:C, 7ufu:D
6 2jnx:A 134 20 0.2000 0.0896 0.6000 2.6
7 1jfk:A 134 19 0.1667 0.0746 0.5263 3.6 3li6:A, 3li6:D, 3li6:G, 3li6:J, 2m7m:A, 2m7n:A, 2nxq:A, 2nxq:B, 3ulg:A, 3ulg:B, 5xop:A, 5xop:B, 5xop:C, 5xop:D, 5xop:E, 5xop:F
8 8uhe:K 593 47 0.2667 0.0270 0.3404 3.8
9 8dq2:A 110 24 0.1833 0.1000 0.4583 4.6 8dq2:B, 8dq2:C, 8dq2:D, 8fnr:A, 8fnr:B, 8fnr:C, 8fnr:D
10 1g82:A 157 25 0.1333 0.0510 0.3200 5.2
11 8v9l:z 375 62 0.3500 0.0560 0.3387 5.2 8v9j:z
12 3f1r:A 157 25 0.1667 0.0637 0.4000 9.1 3f1r:B
13 8xku:A 730 26 0.1833 0.0151 0.4231 9.3 8xkv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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