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BioLiP
>protein
EQRAVAKALFDAVNKHLSNPFIEVEMRLGQFKFTACVSTEDYERIKTYLMTEMENSSMTRSVTHDVSLGWRHTYATDENG
NPTRCVSIVRKKRLFVKNIVVPLGAYNLRFAVSTETPRLKDRLSITDGMFRYDMTQVTEKGVLMHEVEIEGVFEKQLTES
WLEELLRRAMRLATLRT

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6l7v:A 180 181 0.9774 0.9611 0.9558 4.61e-122 6l7w:B
2 6l7x:A 203 201 0.9944 0.8670 0.8756 6.99e-121 6l7w:A, 6l7y:A
3 4pn1:B 261 171 0.1921 0.1303 0.1988 0.016 4pn1:A, 4pn1:C, 4pn1:D
4 4zgs:A 346 78 0.1130 0.0578 0.2564 3.7 4zgs:B, 4zgs:C, 4zgs:D, 4zgs:E, 4zgs:F, 4zgs:G, 4zgs:H
5 7pp8:A 402 46 0.0847 0.0373 0.3261 4.0 7pp8:B, 7pp8:C, 7pp8:D, 7pp8:E, 7pp8:F, 7pp8:G, 7pp8:H, 7pu6:A, 7pu6:B, 7pu6:C, 7pu6:D, 7pu6:E, 7pu6:F, 7pu6:G, 7pu6:H
6 8con:A 379 33 0.0565 0.0264 0.3030 7.2 4rqt:A, 4rqu:A, 4rqu:B
7 5oak:A 90 31 0.0791 0.1556 0.4516 7.6 5oak:C
8 1d8h:A 288 69 0.1073 0.0660 0.2754 8.1 1d8h:B, 1d8h:C, 1d8i:A, 1d8i:B, 1d8i:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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