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BioLiP
>protein
EQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMIVQNVAHDNTTDFTFTVHRNDYLNALEILKQTAAN
IGAREAIGDTNIAKVSIVGVGMRSHAGVASRMFEALAKESINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELD

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yei:C 397 154 0.9872 0.3879 1.0000 1.29e-107 5yei:D, 5yei:B, 5yei:A, 5yei:F, 5yei:E, 5yei:H, 5yei:G
2 2re1:A 148 151 0.5769 0.6081 0.5960 1.13e-62
3 4go7:X 165 156 0.4679 0.4424 0.4679 1.26e-44 3s1t:A, 3s1t:B
4 3ab4:A 370 155 0.4359 0.1838 0.4387 5.90e-41 3ab4:C, 3ab4:E, 3ab4:G, 3ab4:I, 3ab4:O
5 3aaw:C 392 157 0.4359 0.1735 0.4331 1.26e-39 3aaw:A, 3aaw:B, 3aaw:D, 3ab2:A, 3ab2:B, 3ab2:C, 3ab2:D, 3ab2:E, 3ab2:F, 3ab2:G, 3ab2:H, 3ab2:I, 3ab2:J, 3ab2:K, 3ab2:L, 3ab2:M, 3ab2:N, 3ab2:O, 3ab2:P, 3ab4:B, 3ab4:D, 3ab4:F, 3ab4:H, 3ab4:J, 3ab4:K, 3ab4:L, 3ab4:M, 3ab4:N, 3ab4:P, 2dtj:A, 2dtj:B
6 2dt9:A 153 152 0.4295 0.4379 0.4408 5.63e-37 2dt9:B
7 3l76:A 585 158 0.4103 0.1094 0.4051 1.67e-29 3l76:B
8 3l76:A 585 157 0.3846 0.1026 0.3822 1.53e-27 3l76:B
9 3c1m:C 468 143 0.2885 0.0962 0.3147 6.85e-12 3c1m:A, 3c1m:B, 3c1m:D, 3c1n:A, 3c1n:B, 3c1n:C, 3c1n:D, 3c20:A, 3c20:B, 2hmf:A, 2hmf:B, 2hmf:C, 2hmf:D
10 3tvi:E 439 65 0.1859 0.0661 0.4462 3.84e-09 3tvi:A, 3tvi:B, 3tvi:C, 3tvi:D, 3tvi:G, 3tvi:H, 3tvi:I, 3tvi:L
11 2cdq:A 470 63 0.1282 0.0426 0.3175 0.011 2cdq:B
12 4bxd:A 255 60 0.1346 0.0824 0.3500 3.4 4bxd:B, 4bxe:A, 4bxe:B
13 3ihp:B 681 59 0.1218 0.0279 0.3220 4.9 6dxh:A, 6dxt:A, 6dxt:B, 2g43:A, 2g43:B, 2g45:A, 2g45:D, 3ihp:A, 7ms5:A, 7ms5:B, 7ms6:A, 7ms7:A, 7ms7:B, 6nft:A, 6nft:B, 6p9g:A
14 3u48:B 742 82 0.1218 0.0256 0.2317 5.5 3u48:A, 3u4a:B, 3u4a:A
15 4fju:A 338 75 0.1346 0.0621 0.2800 6.4 4fju:B, 4h8a:A, 4h8a:B
16 8oir:Bb 101 51 0.1090 0.1683 0.3333 7.6 6gaw:Bp, 6gb2:Bp, 7nqh:Bp, 7nql:Bp, 7nsh:Bp, 7nsi:Bp, 7nsj:Bp, 7o9m:k, 7of6:k, 8oit:Bb, 8pk0:k, 7qi5:k, 8xt0:L3, 8xt1:L3, 6ydp:Bp, 6ydw:Bp, 6zm5:k

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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