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BioLiP
>protein
EQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFK
TQVGRFAPELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKI
SVTFDPFCYLTLPLASKVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSDKLDTLVDF
PINDLDMSEFLINPNAGPCRYNLIAVSNHYGGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTF
SGTGF

The query sequence (length=325) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7r2g:B 351 339 1.0000 0.9259 0.9587 0.0 6cpm:C, 6cpm:D, 6crn:A, 6crn:B, 6crn:C, 6crn:D, 6gh9:A, 6gha:A, 6ml1:A, 6ml1:B, 7r2g:A
2 2y6e:B 339 336 0.7662 0.7345 0.7411 0.0 2y6e:A, 2y6e:C, 2y6e:E, 2y6e:F
3 3n3k:A 355 333 0.4738 0.4338 0.4625 4.60e-103 2gfo:A, 8xpn:A, 8xpn:B
4 8xpn:C 327 333 0.4646 0.4618 0.4535 2.91e-93
5 3nhe:A 338 336 0.4277 0.4112 0.4137 2.30e-78 6dgf:A, 2ibi:A, 3v6c:A, 3v6e:A, 5xu8:A, 5xve:A
6 2hd5:A 315 332 0.4185 0.4317 0.4096 2.91e-73
7 2y5b:E 325 333 0.3723 0.3723 0.3634 5.47e-63 3i3t:A, 3i3t:C, 3i3t:E, 3i3t:G, 3mtn:A, 3mtn:C, 2y5b:A
8 8bs3:A 324 320 0.2769 0.2778 0.2812 6.78e-35 8bs9:A, 8bs9:C
9 3mhs:A 455 340 0.3015 0.2154 0.2882 1.04e-32 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
10 4fjc:E 434 329 0.2985 0.2235 0.2948 1.76e-30 3m99:A, 3mhh:A
11 4wa6:D 415 328 0.2800 0.2193 0.2774 1.14e-26 4w4u:D
12 5k16:B 328 332 0.2985 0.2957 0.2922 1.17e-26 5cvm:A, 5k16:A, 5k1c:A, 5l8h:A, 5l8w:A
13 5k1b:A 264 320 0.2831 0.3485 0.2875 1.58e-26
14 5cvn:B 321 337 0.2769 0.2804 0.2671 1.68e-25 5cvo:B, 5cvo:E, 6jlq:A
15 5ohk:A 304 331 0.2769 0.2961 0.2719 2.89e-23 5ohn:A, 5ohn:C
16 5wch:A 350 376 0.2708 0.2514 0.2340 6.33e-22 5wch:B, 5wch:C, 5wch:D
17 8itn:A 350 355 0.2646 0.2457 0.2423 8.43e-22 8itn:C, 8itp:D, 8itp:B
18 8a9k:D 285 327 0.2615 0.2982 0.2599 2.85e-20 7ay0:D, 7zh4:D
19 5k1a:A 239 317 0.2615 0.3556 0.2681 1.46e-19 5k1a:C, 5k1a:E, 5k1a:G
20 8y6o:U 458 363 0.3015 0.2140 0.2700 1.97e-19 8h6e:4T, 8h6j:4T, 6qw6:U, 6qx9:U
21 9fcj:D 312 331 0.2677 0.2788 0.2628 5.24e-19 7ay0:B, 9fci:D
22 8d1t:A 330 354 0.2800 0.2758 0.2571 3.31e-18 8d0a:A, 5ohp:A
23 7w3u:A 343 352 0.2554 0.2420 0.2358 4.93e-18 7w3r:A, 7w3u:B, 7w3u:C
24 7ay1:D 341 347 0.2892 0.2757 0.2709 2.37e-17 8a9j:D, 7ay2:B, 7zh3:D
25 5gvi:A 326 352 0.2615 0.2607 0.2415 3.87e-16
26 5cht:A 308 316 0.2554 0.2695 0.2627 6.20e-16 5cht:B, 5chv:A, 5chv:B
27 5n9t:A 357 351 0.2708 0.2465 0.2507 6.47e-14 8d4z:A, 8d4z:B, 6f5h:A, 6f5h:B, 6m1k:A, 6m1k:B, 5n9r:A, 5n9r:B, 5n9t:B, 5nge:A, 5ngf:A, 5ngf:B, 5uqv:A, 5uqv:B, 5uqx:A, 5uqx:B, 6vn2:A, 6vn2:B, 6vn3:A, 6vn3:B, 6vn4:A, 6vn4:B, 6vn5:A, 6vn5:B, 6vn6:A, 6vn6:B, 5vs6:A, 5vs6:B, 5vsb:A, 5vsb:B, 5vsk:A, 5whc:A, 5whc:B, 7xhh:A, 7xhh:B, 7xhk:B
28 6iil:A 341 360 0.2862 0.2727 0.2583 3.03e-13 6iik:A, 6iik:B, 6iil:B, 6iim:A, 6iim:B, 6iin:A, 6iin:B
29 5txk:A 317 346 0.2892 0.2965 0.2717 1.42e-11
30 5nge:B 313 131 0.1354 0.1406 0.3359 4.92e-09 5vsk:B
31 5nge:B 313 21 0.0369 0.0383 0.5714 1.4 5vsk:B
32 7ay2:E 203 150 0.1200 0.1921 0.2600 3.19e-07
33 3ihp:B 681 88 0.0862 0.0411 0.3182 5.29e-06 6dxh:A, 6dxt:A, 6dxt:B, 2g43:A, 2g43:B, 2g45:A, 2g45:D, 3ihp:A, 7ms5:A, 7ms5:B, 7ms6:A, 7ms7:A, 7ms7:B, 6nft:A, 6nft:B, 6p9g:A
34 8p14:A 331 317 0.1969 0.1934 0.2019 2.61e-05 8hje:A, 7tuo:A
35 8ssi:A 283 45 0.0554 0.0636 0.4000 0.001 8ssi:C
36 8p1q:A 439 116 0.0892 0.0661 0.2500 2.3 8p1p:B, 8p1q:B
37 8c61:J 330 209 0.1600 0.1576 0.2488 2.9 8c61:A, 8c61:D, 8c61:G
38 6h4h:A 458 30 0.0369 0.0262 0.4000 3.2 6h4h:B, 8p1p:A
39 3om2:A 448 32 0.0462 0.0335 0.4688 4.0 3om4:A, 3om4:B, 3om4:C, 3om4:D, 3om5:A, 3om5:B, 3om5:C, 3om5:D, 3om6:A, 3om6:B, 3om6:C, 3om6:D, 3om7:C, 3om7:A, 3om7:B, 3om7:D
40 3byj:A 440 32 0.0462 0.0341 0.4688 4.9 3byk:A, 3byn:A, 1oyg:A, 1pt2:A, 6pwq:A, 6pwq:B, 2vdt:A, 6vhq:A, 6vhq:B
41 7dlw:B 419 66 0.0585 0.0453 0.2879 5.1 7dlw:A, 7dlw:C, 7dlw:D, 7dly:A, 7dly:B
42 6pc1:B 483 66 0.0615 0.0414 0.3030 6.3 6pc1:A, 6pc1:C, 6pc1:D, 6pc2:A, 6pc2:B, 6pc3:A, 6pc3:B
43 6lc8:B 318 50 0.0462 0.0472 0.3000 6.7 6lc9:B
44 7w7g:A 1528 55 0.0523 0.0111 0.3091 9.2
45 7pua:Fg 520 75 0.0615 0.0385 0.2667 9.9 7pub:Fg

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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