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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EQLKLTKKDRISVWLRSTFLQGSWNYERMQNGGWAYTLIPALKKLYKTKEDRSAALVRHMEFFNTHPYVAAPILGVTLAL
EEERANGAPIDDVTIQGVKVGMMGPLAGIGDPVFWFTVKPIIGALAASLAMSGNILGPIIYFVAWNAIRMAFTWYTQEFG
YRAGSKITEDLSGGILQDITKGASILGMFILGSLVNRWVSVKFTPTVSSVKLDKGAFIDWDKLPSGAKGIQSALQQQAQG
LSLTDHKITTLQDNLDSLIPGLAALGLTLFCMWLLKKKVSPIVIILGLFVVGIVFHLLHLM

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xno:Z 301 301 1.0000 1.0000 1.0000 0.0 7xno:E, 7xno:I, 7xtg:E, 7xtg:I, 7xtg:Z
2 7vlx:Z 298 298 0.7442 0.7517 0.7517 6.02e-168 7vlx:B, 7vlx:D, 7vly:Z, 7vly:D, 7vly:G
3 8hfs:Z 303 303 0.6645 0.6601 0.6601 6.19e-144 8hfs:F, 8hfs:D
4 7dyr:Z 274 299 0.4784 0.5255 0.4816 7.79e-100 7dyr:C, 7dyr:F, 6k1h:Z, 6k1h:F, 6k1h:C
5 7t3u:C 1575 67 0.0664 0.0127 0.2985 0.38
6 7t3u:A 2020 67 0.0664 0.0099 0.2985 0.38 7t3u:D
7 8tl9:D 2034 67 0.0664 0.0098 0.2985 0.38 8tla:D
8 7t3p:A 2066 67 0.0664 0.0097 0.2985 0.39 7t3p:B, 7t3p:C, 7t3p:D
9 7t3q:A 2103 67 0.0664 0.0095 0.2985 0.39 7t3q:B, 7t3q:C, 7t3q:D, 7t3u:B
10 8tkd:A 2249 67 0.0664 0.0089 0.2985 0.39 8tkd:B, 8tkd:C, 8tkd:D, 8tke:A, 8tke:B, 8tke:C, 8tke:D, 8tkg:A, 8tkg:B, 8tkg:C, 8tkg:D, 8tl9:A, 8tl9:B, 8tla:A, 8tla:B
11 8tk8:A 2268 67 0.0664 0.0088 0.2985 0.39 8tk8:B, 8tk8:C, 8tk8:D, 8tkh:A, 8tkh:B, 8tkh:C, 8tkh:D, 8tki:A, 8tki:B, 8tki:C, 8tki:D, 8tl9:C, 8tla:C
12 8tkf:A 2272 48 0.0498 0.0066 0.3125 0.51 8tkf:D, 8tkf:B, 8tkf:C
13 7t3r:A 2130 48 0.0498 0.0070 0.3125 0.53 7t3r:B, 7t3r:C, 7t3r:D, 7t3t:A, 7t3t:B, 7t3t:C, 7t3t:D
14 6dr0:C 2193 48 0.0498 0.0068 0.3125 0.54 6dqj:A, 6dqj:B, 6dqj:C, 6dqj:D, 6dqn:A, 6dqn:B, 6dqn:C, 6dqn:D, 6dqs:A, 6dqs:B, 6dqs:C, 6dqs:D, 6dqv:A, 6dqv:B, 6dqv:C, 6dqv:D, 6dqz:A, 6dqz:B, 6dqz:D, 6dqz:C, 6dr0:A, 6dr0:B, 6dr0:D, 6dr2:A, 6dr2:B, 6dr2:C, 6dr2:D, 6dra:A, 6dra:B, 6dra:C, 6dra:D, 6drc:A, 6drc:B, 6drc:C, 6drc:D
15 8heq:B 159 55 0.0598 0.1132 0.3273 0.82 8hdj:B, 8hdj:D, 8hdj:F, 8hdj:H
16 5ean:A 1051 77 0.0664 0.0190 0.2597 1.4 5eaw:A, 5eaw:B, 5eax:A, 5eax:B
17 2vn0:A 464 106 0.0864 0.0560 0.2453 1.7 2nnh:A, 2nnh:B, 2nni:A, 2nnj:A, 1pq2:A, 1pq2:B
18 6bz0:A 469 89 0.0797 0.0512 0.2697 3.5 6bz0:B, 6bz0:C, 6bz0:D
19 8avl:A 192 48 0.0498 0.0781 0.3125 4.4 8avl:B, 8avl:C, 8avl:D, 8avl:E, 8avl:F, 8avl:G, 8avl:H, 8avm:A, 8avm:B, 8avm:C, 8avm:D, 8avm:E, 8avm:F
20 6z2w:E 2325 32 0.0399 0.0052 0.3750 5.7 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E
21 6uqk:A 2054 67 0.0631 0.0093 0.2836 8.8 6uqk:B, 6uqk:C, 6uqk:D
22 7nea:A 309 45 0.0498 0.0485 0.3333 9.3 6gkr:A, 6gkr:B, 6gkr:C, 7neb:A, 6q8e:A
23 6o9l:Q 430 21 0.0299 0.0209 0.4286 9.4 8bvw:W, 8byq:W, 7eg9:U, 7ega:U, 7egb:U, 7egc:U, 7ena:EA, 7enc:EA, 5gpy:A, 8gxq:EA, 8gxs:EA, 5iy6:Q, 5iy8:Q, 5iy9:Q, 5iya:Q, 5iyb:Q, 5iyc:Q, 5iyd:Q, 7lbm:Q, 7nvr:W, 7nvs:W, 7nvt:W, 7nvu:W, 7nvy:W, 7nvz:W, 7nw0:W, 8s51:W, 8s52:W, 8s54:W, 8s55:W, 8s5n:W, 1vd4:A, 8wak:U, 8wal:U, 8wan:U, 8wao:U, 8wap:U, 8waq:U, 8war:U, 8was:U

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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