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BioLiP
>protein
EQIVPFYGKHQAGITTAHQTYVYFAALDVTAKEKSDIITLFRNWTSLTQMLTSGKKMSAEQRNQYLPPQDTGESADLSPS
NLTVTFGFGPSFFEKDGKDRFGLKSKKPKHLAALPAMPNDNLDEKQGGGDICIQVCADDEQVAFHALRNLLNQAVGTCEV
RFVNKGFLSGGKNGETPRNLFGFKDGTGNQSTEDDSLMNSIVWVQSGEPDWMTGGTYMAFRKIKMFLEIWDRSSLKDQED
TFGRRKSSGAPFGQKKETDPVKLNQIPSNSHVSLAKSTGKQILRRAFSYTEGLDPKTGYMDAGLLFISFQKNPDNQFIPM
LKALSAKDALNEYTQTIGSALYACPGGCKKGEYIAQRLLE

The query sequence (length=360) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dlk:A 363 360 1.0000 0.9917 1.0000 0.0 7dlk:B, 7dlk:C, 7dlk:D, 7dlk:E, 7dlk:F, 7e5q:A, 7e5q:B, 6kmm:A, 6kmm:B, 6kmm:C, 6kmm:D, 6kmm:E, 6kmm:F, 6kmn:A, 6kmn:B, 6kmn:C, 6kmn:D, 7pkx:A, 7pkx:B, 7pl0:A, 7pl0:B, 7pl0:C, 7pl0:D
2 8rgs:A 366 359 0.4417 0.4344 0.4429 3.26e-102 4grc:A, 6i43:A, 6i43:B, 6i7c:A, 6i7c:B, 6i7z:A, 6i7z:B, 6i8e:A, 6i8e:B, 6i8i:A, 6i8i:B, 6i8j:A, 6i8j:B, 6i8k:A, 6i8k:B, 6i8o:A, 6i8o:B, 6i8p:A, 6i8p:B, 6i8q:A, 6i8q:B, 6i91:A, 6i91:B, 6ibn:A, 6ibn:B, 8olh:A, 8olh:B, 8olp:A, 8olp:B, 8omc:A, 8omc:B, 8pxp:A, 8pxp:B, 6q31:A, 6q31:B, 6q34:A, 6q34:B, 6q3d:A, 6q3d:B, 6q3e:A, 6q3e:B, 8rgs:B, 8rgw:A, 8rgw:B, 8rgy:A, 8rgy:B, 6tb8:A, 6tb8:B
3 2y4e:A 384 375 0.4000 0.3750 0.3840 8.29e-79 3o72:A, 3o72:B, 3o72:C, 3o72:D, 2y4e:B, 2y4f:A, 2y4f:B
4 6qzo:A 361 373 0.3778 0.3767 0.3646 1.28e-75 6qzo:B, 6qzo:C, 6qzo:D, 6qzo:E, 6qzo:F, 6qzo:G, 6qzo:H
5 4gt2:A 371 373 0.3917 0.3801 0.3780 9.36e-75 4gt2:B, 4gt2:E, 4gt2:G, 6gzw:A, 6gzw:B, 5map:A, 5map:B, 5mjh:A, 5mjh:B
6 8fjq:B 361 370 0.3806 0.3795 0.3703 2.25e-67 8fjq:A, 8fjr:A, 8fjr:B, 5jxu:A, 5jxu:B, 7rmu:A
7 6jbn:A 391 378 0.3833 0.3529 0.3651 6.66e-67 6jbn:B
8 8ck9:A 374 377 0.3472 0.3342 0.3316 7.27e-55
9 4gs1:B 376 306 0.3167 0.3032 0.3725 1.26e-54 4gs1:A
10 5fw4:A 368 371 0.3472 0.3397 0.3369 7.13e-51 5fw4:B
11 5de0:B 298 275 0.1889 0.2282 0.2473 1.37e-10 5de0:A, 5de0:C, 5de0:D
12 2iiz:A 306 250 0.1833 0.2157 0.2640 1.23e-08
13 3qns:A 311 238 0.1583 0.1833 0.2395 9.25e-08 4hov:A, 4hov:B, 4hov:C, 3qnr:A, 3qnr:B, 3qnr:C, 3vec:A, 3vec:B, 3vec:C, 3ved:A, 3ved:B, 3ved:C, 3vee:A, 3vee:B, 3vee:C, 3vef:A, 3vef:B, 3vef:C, 3veg:A, 3veg:B, 3veg:C
14 4gu7:A 310 142 0.1111 0.1290 0.2817 2.59e-06 4gu7:B, 4gu7:C, 4gu7:D, 8pws:A, 8pws:B, 8pws:C, 8pws:D, 8pws:E, 8pws:F, 8pwy:A, 8pwy:B, 8pwy:C, 8pwy:D, 8pwy:E, 8pwy:F, 7qze:A, 7qze:B, 7qze:C, 7qze:D, 7qze:E, 7qze:F, 7qzf:A, 7qzf:B, 7qzf:C, 7qzf:D, 7qzf:E, 7qzf:F, 7qzg:A, 7qzg:B, 7qzg:C, 7qzg:D, 7qzg:E, 7qzg:F, 7qzh:A, 7qzh:B, 7qzh:C, 7qzh:D, 7qzh:E, 7qzh:F, 8rwy:A, 8rwy:B, 8rwy:C, 8rwy:D, 8rwy:E, 8rwy:F, 6yr4:A, 6yr4:B, 6yr4:C, 6yr4:D, 6yr4:E, 6yr4:F, 6yrc:A, 6yrc:B, 6yrc:C, 6yrc:D, 6yrc:E, 6yrc:F, 6yrd:A, 6yrd:B, 6yrd:C, 6yrd:D, 6yrd:E, 6yrd:F, 6yrj:A, 6yrj:B, 6yrj:C, 6yrj:D, 6yrj:E, 6yrj:F, 7zmj:A, 7zmj:B, 7zmj:C, 7zmj:D, 7zmj:E, 7zmj:F
15 7o9j:B 307 265 0.1944 0.2280 0.2642 4.44e-06 7o9j:A, 7o9l:A, 7o9l:B, 7odz:A, 7odz:B, 8ohy:A
16 7bok:A 309 202 0.1444 0.1683 0.2574 7.39e-06 7bok:B, 7bok:C, 7bok:D, 7bok:E, 7bok:F
17 7ylo:A 311 246 0.1444 0.1672 0.2114 2.29e-04 7ylo:B
18 5vj0:D 300 176 0.1222 0.1467 0.2500 3.93e-04 5gt2:A, 5gt2:B, 5gt2:C, 5gt2:D, 5vj0:A, 5vj0:B, 5vj0:C
19 7yzt:A 306 141 0.1083 0.1275 0.2766 4.26e-04 7yzt:B, 7yzt:C
20 7qyq:B 284 198 0.1306 0.1655 0.2374 0.005 7qyq:A, 7qyq:C, 7qyq:D, 7qyz:A, 7qza:A, 7qza:B, 7qza:C, 7qza:D, 7qza:E, 7qza:F, 7qza:G, 7qza:H
21 5c2i:A 468 45 0.0528 0.0406 0.4222 0.011 5c2i:B, 5c2i:C, 5c2i:D
22 8u4z:A 313 144 0.1167 0.1342 0.2917 0.013
23 6fiy:B 303 222 0.1444 0.1716 0.2342 0.020 6fiy:A, 6fks:A, 6fks:B, 6fkt:A, 6fkt:B, 6fl2:A, 6fl2:B, 6rpd:A, 6rpd:B, 6rpe:A, 6rpe:B, 6rqy:A, 6rqy:B, 6rr1:A, 6rr1:B, 6rr4:A, 6rr4:B, 6rr5:A, 6rr5:B, 6rr6:A, 6rr6:B, 6rr8:A, 6rr8:B
24 4au9:A 448 144 0.0917 0.0737 0.2292 0.72 5ag0:A, 5ag0:B, 5ag1:A, 5ag1:B, 4au9:B, 5ikd:A, 5ikg:A, 4uzi:A, 4uzi:B, 4w7j:A, 4w7j:B, 4w7j:C, 4w7j:D, 4w7k:A, 4w7k:B, 4w7l:A, 4w7l:B, 4w7m:A, 4w7m:B, 4w7n:A, 4w7n:B, 4w7o:A
25 6n2c:A 409 97 0.0694 0.0611 0.2577 0.75 6n2c:B
26 6d24:A 502 88 0.0611 0.0438 0.2500 0.89 5aq1:A, 5aq1:B, 5aq1:C, 6d24:B, 6d24:C, 6d24:D
27 4pvd:A 342 100 0.0722 0.0760 0.2600 5.6 4pvd:B
28 7anv:A 467 43 0.0417 0.0321 0.3488 5.6
29 7dnm:A 336 29 0.0333 0.0357 0.4138 6.8 7dnm:P, 7dnn:A, 7dnn:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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