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BioLiP
>protein
EQGNIRFAVDCSAGKDLELNLNEFADYVRTHFKINNRKHGVAEKVACSVEGDSLVIQTTGYEFAKRYVKYLTKRFLYQDY
QGVFRVLSTDKETYTLKPYT

The query sequence (length=100) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8btd:LV 115 100 1.0000 0.8696 1.0000 1.85e-71 8br8:LV, 8brm:LV, 8bsi:LV, 8bsj:LV, 8btr:LV, 8fru:U, 7pwg:U, 7pwo:U2
2 5xy3:U 97 95 0.3300 0.3402 0.3474 1.58e-14
3 6xu6:CU 96 92 0.3300 0.3438 0.3587 5.39e-14 6xu7:CU
4 8rxh:LU 122 101 0.3800 0.3115 0.3762 7.69e-11 8a3w:U, 8a98:U, 6az3:U, 3jcs:U, 8rxx:LU, 5t2a:T
5 8ova:BV 122 101 0.3600 0.2951 0.3564 6.53e-10 8ove:BV, 4v8m:BV
6 8ovj:U 107 92 0.3500 0.3271 0.3804 5.81e-09
7 5t5h:V 85 92 0.3200 0.3765 0.3478 7.64e-09
8 8esq:U 98 96 0.2900 0.2959 0.3021 3.91e-08 8esr:U, 8etc:U, 8etg:U, 8eug:U, 8eui:U
9 7r81:W1 101 94 0.2600 0.2574 0.2766 6.04e-06
10 8i9x:LU 105 97 0.2700 0.2571 0.2784 6.83e-06 8i9y:LU, 8i9z:LU, 8ia0:LU, 7olc:LU, 7old:LU, 8oo0:LU, 8pv1:LU, 8pv2:LU, 8pv3:LU, 8pv4:LU, 8pv5:LU, 8pv6:LU, 8pv7:LU, 8pv8:LU, 8pvk:LU, 8pvl:LU, 7z3n:LU, 7z3o:LU
11 9bh5:CU 100 96 0.2800 0.2800 0.2917 2.48e-05 9cai:CU
12 3j79:X 97 95 0.2400 0.2474 0.2526 3.91e-05 3jbn:AX, 3jbo:AX, 3jbp:AX, 8tpu:AX, 5umd:X
13 4v8p:AM 100 96 0.2700 0.2700 0.2812 5.43e-05 4v8p:DM, 4v8p:FM, 4v8p:HM
14 8p5d:LU0 100 93 0.2500 0.2500 0.2688 0.001 8p60:LU0, 8p60:KU0, 7qca:LU0
15 5xxb:T 99 97 0.2500 0.2525 0.2577 0.032
16 3d2r:B 362 69 0.1900 0.0525 0.2754 0.28 3d2r:A, 2e0a:A, 2e0a:B, 7eat:A, 7eat:B, 7ebb:A, 7ebb:B, 7ebg:B, 2zdx:B, 2zdy:A, 2zdy:B, 2zkj:A, 2zkj:B
17 6zj3:Lj 101 99 0.2600 0.2574 0.2626 0.86
18 4v6w:CU 116 95 0.2500 0.2155 0.2632 1.0 6xu8:CU
19 6d4b:A 361 63 0.2000 0.0554 0.3175 1.2 6d4b:B, 6d4c:A, 6d4c:B, 5dn9:A, 5dn9:B
20 6zu5:LU0 97 95 0.2800 0.2887 0.2947 1.4
21 7ebg:A 337 70 0.1900 0.0564 0.2714 1.7 2zdx:A
22 5zum:B 537 46 0.1500 0.0279 0.3261 2.0 5zum:A
23 4v6x:CU 112 95 0.2100 0.1875 0.2211 2.3 7a01:82, 8a3d:O, 5aj0:AU, 8b5l:U, 8b6c:U, 9bdl:AL22, 9bdn:AL22, 9bdp:AL22, 7bhp:LU, 8bhf:H1, 8bpo:T2, 8btk:BU, 7cpu:LU, 7cpv:LU, 4d5y:U, 4d67:U, 6d90:U, 6d9j:U, 9f1b:BU, 9f1c:BU, 9f1d:BU, 7f5s:LU, 8fkz:LF, 8fl2:LF, 8fl3:LF, 8fl4:LF, 8fl6:LF, 8fl7:LF, 8fl9:LF, 8fla:LF, 8flb:LF, 8flc:LF, 8fld:LF, 8fle:LF, 8flf:LF, 9fq0:LU, 6frk:U, 6ftg:U, 6fti:U, 6ftj:U, 8g5y:LU, 8g5z:LU, 8g60:LU, 8g61:LU, 8g6j:LU, 8glp:LU, 6gz3:AU, 6gz4:AU, 6gz5:AU, 6hcf:U3, 6hcj:U3, 6hcm:U3, 6hcq:U3, 8idt:d, 8idy:d, 8ie3:d, 8ifd:2O, 8ife:2O, 8ine:d, 8inf:d, 8ink:d, 6ip5:2O, 6ip6:2O, 6ip8:2O, 8ipd:d, 8ipx:d, 8ipy:d, 8ir1:d, 8ir3:d, 3j7o:U, 3j7p:U, 3j7q:U, 3j7r:U, 3j92:U, 3jag:U, 3jah:U, 3jai:U, 3jaj:U, 3jan:U, 8jdj:Z, 8jdk:Z, 8jdl:Z, 8jdm:Z, 8k2c:LU, 5lks:LU, 6lqm:d, 6lsr:d, 6lss:d, 7ls1:O2, 7ls2:O2, 6lu8:d, 5lzs:U, 5lzt:U, 5lzu:U, 5lzv:U, 5lzw:U, 5lzx:U, 5lzy:U, 5lzz:U, 7mdz:U, 6mtb:U, 6mtc:U, 6mtd:U, 6mte:U, 7nfx:U, 7nwg:U3, 7nwh:U, 7nwi:U, 7o7y:BU, 7o7z:BU, 7o80:BU, 7o81:BU, 7obr:U, 8ohd:LU, 8oj0:LU, 8oj5:LU, 8oj8:LU, 6ole:V, 6olf:V, 6olg:AU, 6oli:V, 6olz:AU, 6om0:V, 6om7:V, 7oya:U1, 7oyb:U1, 7oyc:U1, 7oyd:U, 8p2k:BU, 6p5i:AU, 6p5j:AU, 6p5k:AU, 6p5n:AU, 8q7z:BU, 8q87:BU, 8qfd:U, 7qgg:V, 8qoi:LU, 7qvp:LU, 7qvp:MU, 7qwq:U, 7qwr:U, 7qws:U, 6qzp:LU, 6r5q:U, 6r6g:U, 6r6p:U, 6r7q:U, 8rjb:U, 8rjc:U, 8rjd:U, 8scb:U, 6sgc:U2, 6swa:S, 5t2c:O, 6t59:U3, 7tm3:U, 7toq:AL22, 7tor:AL22, 7tut:U, 7ucj:U, 7uck:U, 4ug0:LU, 4ujc:BU, 4ujd:AU, 4uje:CU, 6w6l:V, 6xa1:LU, 7xnx:LU, 7xny:LU, 8xsx:LU, 8xsy:LU, 8xsz:LU, 6y0g:LU, 8y0w:LU, 8y0x:LU, 6y2l:LU, 6y57:LU, 6y6x:LU, 8yoo:LU, 8yop:LU, 6z6l:LU, 6z6m:LU, 6z6n:LU, 7zjw:LX, 7zjx:LX, 6zm7:LU, 6zme:LU, 6zmi:LU, 6zmo:LU, 6zvk:82
24 9d8a:A 172 59 0.1600 0.0930 0.2712 2.6
25 2i4b:A 401 41 0.1400 0.0349 0.3415 3.4 2i4c:A
26 6ln0:A 425 56 0.1600 0.0376 0.2857 4.6
27 2dkc:A 536 73 0.2200 0.0410 0.3014 4.7 2dkc:B, 2dkd:A, 2dkd:B
28 5tci:H 406 39 0.1300 0.0320 0.3333 5.5 6dwe:B, 6dwe:H, 6dwe:F, 6dwe:D, 6e9p:B, 6e9p:D, 6e9p:F, 6e9p:H, 5ocw:B, 5ocw:D, 5ocw:F, 5ocw:H, 5ocw:J, 5ocw:L, 5ocw:N, 5ocw:P, 5ocw:R, 5ocw:T, 5ocw:V, 5ocw:X, 5tcg:B, 5tcg:H, 5tcg:F, 5tcg:D, 5tci:B, 5tci:F, 5tci:D, 5tcj:B, 5tcj:H, 5tcj:F, 5tcj:D, 6u6c:B, 6u6c:D, 6u6c:F, 6u6c:H, 6uap:B, 6uap:D, 6uap:F, 6uap:H, 6ub9:B, 6ub9:D, 6ub9:F, 6ub9:H, 6usa:B, 6usa:D, 6usa:F, 6usa:H
29 6z2w:E 2325 24 0.1200 0.0052 0.5000 7.4 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E
30 5m0p:A 424 27 0.1100 0.0259 0.4074 9.7 4l40:A, 4l54:A, 5m0n:A, 5m0o:A, 5m0o:C, 5m0p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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