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BioLiP
>protein
EQDCKYWPNCANPLCAFRHPTMPPCRNGGECKVPGCKFTHLKTPCKFRPCTNRSCPFLHEEGQR

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4lj0:A 65 64 1.0000 0.9846 1.0000 3.87e-43 4lj0:B
2 2lhn:A 80 65 0.3438 0.2750 0.3385 0.001 5l2l:A, 5l2l:B, 5l2l:F, 5l2l:E
3 6dnh:C 117 51 0.2656 0.1453 0.3333 0.50 8e3i:C, 8e3q:C, 6fuw:C, 8r8r:C, 2rhk:D, 6urg:C, 6uro:C
4 2d9n:A 77 51 0.2656 0.2208 0.3333 0.50 2rhk:C
5 5awp:A 596 11 0.1250 0.0134 0.7273 0.72 5awq:A
6 8irm:A 540 37 0.1875 0.0222 0.3243 1.0 8irm:B, 8irn:A, 8irn:B, 8iro:B, 8iro:A, 8irp:B, 8irp:A, 8wmq:B, 8wmq:A
7 8hmc:B 1195 19 0.1094 0.0059 0.3684 3.0 8hmd:B
8 8qcf:K 915 31 0.1875 0.0131 0.3871 3.2
9 5c0w:J 970 31 0.1875 0.0124 0.3871 3.3 5k36:K, 5vzj:K
10 4ifd:J 948 31 0.1875 0.0127 0.3871 3.5 5c0x:J, 5jea:J, 2vnu:D
11 3zj2:A 71 18 0.1562 0.1408 0.5556 3.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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