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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPKTKRSPLTRAHLTEVESRLERL

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3coq:A 89 57 1.0000 0.6404 1.0000 5.56e-36 3coq:B, 1d66:A, 1d66:B, 7uik:T, 7uik:U, 7uio:GA, 7uio:GB
2 1aw6:A 43 36 0.6316 0.8372 1.0000 3.91e-20
3 1cld:A 33 33 0.3684 0.6364 0.6364 3.39e-07
4 1pyi:A 88 53 0.3684 0.2386 0.3962 3.47e-04 1pyi:B
5 2hap:C 76 36 0.2632 0.1974 0.4167 0.069 2hap:D, 1hwt:C, 1hwt:D, 1hwt:G, 1hwt:H, 1pyc:A, 1qp9:A, 1qp9:B, 1qp9:C, 1qp9:D
6 1ajy:A 71 52 0.2807 0.2254 0.3077 0.083 1ajy:B, 1zme:C, 1zme:D
7 1t8y:F 461 25 0.2105 0.0260 0.4800 0.49 1t8s:A, 1t8s:B, 1t8s:C, 1t8s:D, 1t8s:E, 1t8s:F, 1t8y:C, 1t8y:B, 1t8y:E, 1t8y:A
8 6gys:B 579 52 0.2456 0.0242 0.2692 0.52 6f07:B, 6gyp:B, 6gys:C, 6gys:J, 6gys:I, 6gyu:B, 7k7g:M, 8ow1:CE
9 1adj:A 420 14 0.1930 0.0262 0.7857 2.6 1adj:B, 1adj:C, 1adj:D, 1ady:A, 1ady:B, 1ady:C, 1ady:D, 4rdx:A
10 4jwf:A 187 35 0.2632 0.0802 0.4286 3.3 4jwf:B, 4jwh:A, 4jwh:B
11 8gju:J 689 29 0.1930 0.0160 0.3793 8.5 8gju:K, 8gju:L, 8gju:H
12 2xiq:A 714 29 0.1930 0.0154 0.3793 8.5 8dyj:B, 8dyl:B, 2xij:A, 2xiq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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