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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8hil:L 46 46 1.0000 1.0000 1.0000 2.03e-28 7eu0:L, 7eu1:L, 8him:L, 8hyj:L, 8xmb:L, 8xmc:L, 8xmd:L, 8xme:L
2 8a3y:L 47 46 0.6087 0.5957 0.6087 2.32e-17 7a6h:L, 7ae3:L, 7aea:L, 7b0y:L, 8b3d:L, 8b3f:L, 7b7u:L, 8bvw:L, 8byq:L, 8bz1:L, 7d58:L, 7d59:L, 7dn3:L, 7du2:L, 7edx:z, 7eg7:z, 7eg8:z, 7eg9:z, 7ega:z, 7egb:z, 7egc:z, 7ena:PL, 7enc:PL, 6exv:L, 7f4g:L, 7fji:L, 7fjj:L, 5flm:L, 6gmh:L, 6gml:L, 8gxq:PL, 8gxs:PL, 8ity:L, 8iue:L, 8iuh:L, 5iy6:L, 5iy7:L, 5iy8:L, 5iy9:L, 5iya:L, 5iyb:L, 5iyc:L, 7lbm:L, 7nvr:L, 7nvs:L, 7nvt:L, 7nvu:L, 7nvy:L, 7nvz:L, 7nw0:L, 6o9l:L, 7ob9:L, 7oba:L, 7obb:L, 8oeu:L, 8oev:L, 8oew:L, 8of0:L, 5oik:L, 7okx:L, 7oky:L, 7ol0:L, 7oo3:L, 7oob:L, 7oop:L, 7opc:L, 7opd:L, 7ozn:L, 7ozn:X, 7ozo:L, 7ozo:X, 7ozp:L, 7ozp:X, 8p4a:L, 8p4b:L, 8p4e:L, 8p4f:L, 7pks:L, 8rbx:L, 8s51:L, 8s52:L, 8s5n:L, 6ted:L, 8uha:L, 8uhd:L, 8uhg:L, 8ui0:L, 8uis:L, 7vba:L, 7vbb:L, 7vbc:L, 8w8e:L, 8w8f:L, 8wak:z, 8wal:z, 8wan:z, 8wao:z, 8wap:z, 8waq:z, 8war:z, 8was:z, 8wat:z, 8wau:z, 8wav:z, 8waw:z, 8wax:z, 8way:z, 8waz:z, 8wb0:z, 6xre:L, 7ycx:a, 7zwd:L, 7zx7:L, 7zx8:L
3 7aoc:L 45 45 0.5435 0.5556 0.5556 1.94e-16 7aod:L, 7aod:X, 7aoe:L, 3h0g:L, 3h0g:X
4 6a5o:L 45 44 0.4348 0.4444 0.4545 1.16e-12 6a5p:L, 8h0v:L, 8h0w:L, 8he5:L, 6ir9:L, 6j4w:L, 6j4x:L, 6j4y:L, 6j4z:L, 6j50:L, 6j51:L, 8jh2:L, 8jh3:L, 8jh4:L, 7wbv:L, 7wbw:L, 7wbx:L, 7xn7:L, 5xog:L, 5xon:L, 7xse:L, 7xsx:L, 7xsz:L, 7xt7:L, 7xtd:L, 7xti:L, 8yfq:L, 8yfr:L
5 8bws:L 50 44 0.4348 0.4000 0.4545 3.29e-12 4a3b:L, 4a3c:L, 4a3d:L, 4a3e:L, 4a3f:L, 4a3g:L, 4a3i:L, 4a3j:L, 4a3l:L, 4a3m:L, 4a93:L, 2b63:L, 2b8k:L, 4bbr:L, 4bbs:L, 6blo:L, 6blp:L, 6bm2:L, 6bm4:L, 6bqf:L, 4bxx:L, 4bxz:L, 4by7:L, 4c2m:1, 4c2m:L, 4c3h:L, 4c3i:L, 4c3j:L, 5c4j:L, 8cen:L, 8ceo:L, 6cnb:L, 6cnc:L, 6cnd:L, 6cnf:L, 3cqz:L, 2e2h:L, 2e2i:L, 2e2j:L, 6eu0:L, 6eu1:L, 6eu2:L, 6eu3:L, 6f41:L, 6f42:L, 6f44:L, 5fj8:L, 5fj9:L, 5fja:L, 5fmf:L, 5fyw:L, 5fz5:L, 5g5l:L, 3gtg:L, 3gtj:L, 3gtk:L, 3gtm:L, 3gtp:L, 3gtq:L, 3h3v:M, 6h67:L, 6h68:L, 6hko:L, 6hlq:L, 6hlr:L, 6hls:L, 3hou:L, 3hou:X, 3hov:L, 3how:L, 3hox:L, 3hoy:L, 3hoz:L, 1i3q:L, 3i4m:L, 3i4n:L, 1i50:L, 1i6h:L, 6i84:L, 5ip7:L, 5ip9:L, 3j0k:L, 2ja5:L, 2ja6:L, 2ja7:L, 2ja7:X, 2ja8:L, 9ja1:L, 8jch:L, 3k1f:L, 8k5p:L, 3k7a:L, 1k83:L, 7ked:L, 7kee:L, 7kef:L, 5lmx:L, 5m3f:L, 5m3m:L, 3m4o:L, 5m5w:L, 5m5x:L, 5m5y:L, 5m64:L, 7mei:L, 7mk9:L, 7ml0:L, 7ml1:L, 7ml2:L, 7ml4:L, 5n5y:L, 5n5z:L, 5n60:L, 5n61:L, 7nkx:L, 7nky:L, 2nvq:L, 2nvt:L, 2nvx:L, 2nvy:L, 2nvz:L, 7o4i:L, 7o4j:L, 6o6c:J, 7o72:L, 7o73:L, 7o75:L, 5oa1:L, 5ot2:L, 3po2:L, 3po3:L, 3qt1:L, 1r5u:L, 2r7z:L, 1r9s:L, 1r9t:L, 2r92:L, 2r93:L, 7rim:L, 7rip:L, 7riq:L, 7riw:L, 7rix:L, 7riy:L, 6rqt:L, 6ruo:L, 6rwe:L, 3rzd:L, 3rzo:L, 3s14:L, 3s15:L, 3s16:L, 3s17:L, 3s1m:L, 3s1n:L, 3s1q:L, 3s1r:L, 3s2d:L, 3s2h:L, 1sfo:L, 5sva:L, 6tps:L, 6tut:L, 8tug:L, 8tvp:L, 8tvq:L, 8tvs:L, 8tvv:L, 8tvw:L, 8tvx:L, 1twa:L, 1twc:L, 1twf:L, 1twg:L, 1twh:L, 5u5q:L, 8u9r:L, 8u9x:L, 8ukq:L, 8ukr:L, 8uks:L, 8ukt:L, 8uku:L, 6upx:L, 6upy:L, 6upz:L, 6uq0:L, 6uq1:L, 6uq2:L, 6uq3:L, 4v1m:L, 4v1n:L, 4v1o:L, 5vvr:L, 5vvs:L, 5w4u:L, 5w51:L, 5w5y:L, 5w64:L, 5w65:L, 5w66:L, 1wcm:L, 4x67:L, 4x6a:L, 1y1v:L, 1y1w:L, 4y52:L, 1y77:L, 4y7n:L, 4ym7:AL, 4ym7:BL, 4ym7:CL, 4ym7:DL, 4ym7:EL, 4ym7:FL, 2yu9:L, 7z0h:L, 7z1l:L, 7z1m:L, 7z1n:L, 7z1o:L, 7z2z:L, 7z30:L, 7z31:L, 7zs9:L, 7zsa:L, 7zsb:L
6 6drd:L 37 44 0.5000 0.6216 0.5227 1.02e-10
7 5x50:L 46 41 0.3696 0.3696 0.4146 9.54e-10
8 9bct:P 48 38 0.3261 0.3125 0.3947 0.017 9bcu:P, 4qiw:P, 4qiw:W
9 7ok0:P 47 43 0.3696 0.3617 0.3953 0.022 7oq4:P, 7oqy:P
10 8cro:P 48 37 0.3043 0.2917 0.3784 0.44 8oki:P, 8orq:P, 8p2i:P, 8rbo:P
11 2y0s:P 45 43 0.3261 0.3333 0.3488 0.70 4ayb:P, 3hkz:P, 3hkz:X, 2pmz:P, 2pmz:Z, 4v8s:AX, 4v8s:BP, 2waq:P, 2wb1:P, 2wb1:X, 2y0s:X
12 4v4n:Ag 45 31 0.2826 0.2889 0.4194 0.76 4v6u:Bg
13 8d4a:A 1207 25 0.1957 0.0075 0.3600 0.98 8d4b:A
14 8q3k:B 1020 49 0.2609 0.0118 0.2449 2.7
15 8q3b:B 1104 49 0.2609 0.0109 0.2449 2.7
16 2eok:A 42 14 0.1957 0.2143 0.6429 3.6
17 2ba1:A 179 23 0.1957 0.0503 0.3913 3.9 2ba1:C, 2ba1:B, 3m7n:A, 3m7n:B, 3m7n:C, 3m85:A, 3m85:B, 3m85:C
18 6skf:Bj 47 30 0.2609 0.2553 0.4000 5.0 6skg:Bj, 6th6:Bj
19 9ata:A 306 19 0.1739 0.0261 0.4211 6.5 9ata:B, 9atd:A, 9ate:A, 9ate:B, 9atf:A, 9atg:A, 9ath:A, 9ath:B, 9ati:A, 9atj:A, 9ats:A, 9att:A, 9att:B, 9boo:A, 8czt:A, 8czu:A, 8czv:A, 7d3c:A, 7d3c:B, 8dgy:A, 8e6b:A, 8e6b:B, 8e6c:A, 8e6d:A, 8e6e:A, 7ene:A, 7ene:B, 7ene:C, 7ene:D, 8hut:A, 8hut:B, 8ig6:A, 8ig6:B, 8j34:A, 8j34:B, 4rsp:A, 7t3y:A, 7t3y:B, 7t3z:A, 7t3z:B, 7t40:A, 7t41:A, 7tq7:A, 7tq8:A, 6vgy:A, 6vgy:B, 6vgz:A, 6vgz:B, 6vh0:A, 6vh0:B, 6vh1:A, 6vh1:B, 6vh2:A, 6vh2:B, 6vh3:A, 6vh3:B, 7vtc:A, 5wkj:A, 5wkk:A, 5wkl:A, 5wkm:A, 7wqj:A, 7xry:A, 7xry:B, 4ylu:A, 4ylu:B, 4ylu:C, 4ylu:D
20 4y0h:D 463 16 0.1522 0.0151 0.4375 6.5 6b6g:A, 6b6g:B, 6b6g:C, 6b6g:D, 1ohv:A, 1ohv:B, 1ohv:C, 1ohv:D, 1ohw:A, 1ohw:B, 1ohw:C, 1ohw:D, 1ohy:A, 1ohy:B, 1ohy:C, 1ohy:D, 4y0d:A, 4y0d:B, 4y0d:C, 4y0d:D, 4y0h:A, 4y0h:B, 4y0h:C, 4y0i:A, 4y0i:B, 4y0i:C, 4y0i:D, 4zsw:A, 4zsw:B, 4zsw:C, 4zsw:D, 4zsy:A, 4zsy:B, 4zsy:C, 4zsy:D
21 4nqa:H 319 42 0.2391 0.0345 0.2619 6.5 6a5y:D, 6a5z:D, 6a5z:L, 6a60:D, 7a77:A, 7a78:A, 7a79:A, 7a79:B, 3a9e:A, 2acl:A, 2acl:C, 2acl:E, 2acl:G, 7aos:A, 7b88:A, 7b9o:A, 7bk4:A, 7bk4:C, 1by4:A, 1by4:B, 1by4:C, 1by4:D, 7cfo:A, 7cfo:B, 7cfo:D, 7cfo:C, 4cn2:C, 4cn2:D, 4cn3:A, 4cn3:D, 4cn3:B, 4cn3:C, 4cn5:A, 4cn5:B, 4cn7:A, 4cn7:B, 4cn7:E, 4cn7:F, 1dsz:B, 3dzy:A, 3e94:A, 5ec9:A, 3fal:A, 3fal:C, 1fby:A, 1fby:B, 6fbq:A, 6fbq:B, 6fbr:A, 6fbr:B, 3fc6:A, 3fc6:C, 1fm6:A, 1fm6:U, 1fm9:A, 3fug:A, 1g5y:B, 1g5y:C, 3h0a:A, 1h9u:A, 1h9u:B, 1h9u:C, 1h9u:D, 8hbm:A, 8hbm:E, 6hn6:A, 8j54:C, 8j54:D, 8j54:E, 8j54:F, 5ji0:A, 6jno:A, 6jno:D, 6jnr:A, 6jnr:B, 4k4j:A, 4k6i:A, 1k74:A, 3kwy:A, 6l6k:A, 6lb4:A, 6lb5:A, 6lb5:C, 6lb6:A, 5lyq:A, 4m8e:A, 4m8h:A, 5mj5:A, 5mk4:A, 5mk4:C, 5mkj:A, 5mku:A, 5mmw:A, 1mv9:A, 1mvc:A, 1mzn:A, 1mzn:C, 1mzn:E, 1mzn:G, 4n5g:A, 4n5g:D, 4n8r:A, 4n8r:D, 7nke:A, 7nke:C, 2nll:A, 4nqa:A, 3nsq:B, 3oap:A, 4oc7:A, 3ozj:A, 3ozj:C, 2p1t:A, 2p1u:A, 2p1v:A, 3pcu:A, 7pdq:A, 7pdt:A, 7pdt:B, 4poh:A, 4poj:A, 4pp3:A, 4pp5:A, 8pp0:A, 1r0n:A, 3r29:A, 3r29:B, 3r2a:B, 3r2a:D, 3r2a:A, 3r2a:C, 3r5m:A, 3r5m:C, 1rdt:A, 4rfw:A, 4rmc:A, 4rmd:A, 4rme:A, 1rxr:A, 6sjm:A, 6sti:A, 5tbp:A, 5tbp:C, 5tbp:B, 5tbp:D, 1uhl:A, 3uvv:B, 7uw2:A, 7uw4:A, 1xdk:A, 1xdk:E, 1xls:A, 1xls:B, 1xls:C, 1xls:D, 1xv9:A, 1xv9:C, 1xvp:A, 1xvp:C, 6xwg:C, 6xwh:C, 6xwh:D, 1ynw:B, 5z12:C, 5z12:B, 5zqu:A, 5zqu:C, 5zqu:B, 5zqu:D, 4zsh:A, 2zxz:A, 2zy0:A, 2zy0:C
22 8x7u:D 654 39 0.2826 0.0199 0.3333 7.2 8x7u:E, 8x7u:C, 8x7u:B, 8x7u:F, 8x7u:A
23 3dzu:A 289 42 0.2391 0.0381 0.2619 7.2 3e00:A, 5uan:A
24 3na7:A 237 20 0.2609 0.0506 0.6000 8.1
25 4pof:A 255 32 0.2174 0.0392 0.3125 9.4 5iy0:A, 5iy0:B, 5iy0:C, 5iy0:D, 5iy0:E, 5iy0:F, 4pof:B, 4pof:C, 4pof:D, 4pof:E, 4pof:F, 4pog:A, 4pog:E, 4pog:F, 4pog:K, 4pog:L, 4pog:G, 4pog:H, 4pog:I, 4pog:J, 4pog:B, 4pog:C, 4pog:D, 4ywl:A, 4ywl:B, 4ywl:C, 4ywl:D, 4ywl:E, 4ywl:F, 4ywl:G, 4ywl:H, 4ywl:I, 4ywl:J, 4ywm:A, 4ywm:B, 4ywm:C, 4ywm:D, 4ywm:E, 4ywm:F, 4ywm:G, 4ywm:H, 4ywm:I, 4ywm:J
26 5iy6:I 125 40 0.1957 0.0720 0.2250 10.0 8a3y:I, 8a40:I, 7b0y:I, 8b3d:I, 8b3f:I, 7b7u:I, 8bvw:I, 8byq:I, 8bz1:I, 6drd:I, 7edx:w, 7eg7:w, 7eg8:w, 7eg9:w, 7ega:w, 7egb:w, 7egc:w, 7ena:PI, 7enc:PI, 6exv:I, 7f4g:I, 5flm:I, 6gmh:I, 6gml:I, 8gxq:PI, 8gxs:PI, 5iy7:I, 5iy8:I, 5iy9:I, 5iya:I, 5iyb:I, 5iyc:I, 5iyd:I, 7lbm:I, 7nvr:I, 7nvs:I, 7nvt:I, 7nvu:I, 7nvy:I, 7nvz:I, 7nw0:I, 8oeu:I, 8oev:I, 8oew:I, 8of0:I, 5oik:I, 7okx:I, 7oky:I, 7ol0:I, 7oo3:I, 7oob:I, 7oop:I, 7opc:I, 7opd:I, 7ozn:I, 7ozn:U, 7ozo:I, 7ozo:U, 7ozp:I, 7ozp:U, 8p4a:I, 8p4b:I, 8p4e:I, 8p4f:I, 7pks:I, 8rbx:I, 8s51:I, 8s52:I, 8s54:I, 8s55:I, 8s5n:I, 6ted:I, 8uha:I, 8uhd:I, 8uhg:I, 8ui0:I, 8uis:I, 7unc:I, 7und:I, 8w8e:I, 8w8f:I, 8wak:w, 8wal:w, 8wan:w, 8wao:w, 8wap:w, 8waq:w, 8war:w, 8was:w, 8wat:w, 8wau:w, 8wav:w, 8waw:w, 8wax:w, 8way:w, 8waz:w, 8wb0:w, 6xre:I, 7ycx:7, 7zwd:I, 7zx7:I, 7zx8:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218