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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EPQYQTQVSGYIITVPNETTQIRKFLASNQRINQFLFQHSTFRVELAPFAKGGERLAFRAINGRGDRIVLKRFFQQRPLT
MLLETIERQLICIYLANIFNKLNVSPNKLHFLPNYLFIPSPTKDLDGKILTLEQTEQAVAATCRTPNFVEPYLSGYFIKY
IDNNGWINESEFHSTLHAFAHWTWVHTKGALLICDIQGVNANNKFYLTDPALHHIDQNKFIYSETNLGEVGISQFFRTHQ
CNAICQGLHLPKHKEQVLPDTTKGTTLE

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4kuj:B 268 268 1.0000 1.0000 1.0000 0.0 4kuj:A, 4nl0:A, 4nl0:B
2 4zme:A 262 274 0.2537 0.2595 0.2482 1.30e-16 5dyj:A, 5dyj:B, 5e4h:A, 5e4h:B, 5e4h:C, 5e4h:D, 5e4h:E, 5e4h:F, 5e4h:G, 5e4h:H, 5e9e:A, 5e9e:B, 3lkm:A, 3lla:A, 3lla:B, 3lmh:A, 3lmh:B, 3lmi:A, 3lmi:B, 3lmi:C, 3lmi:D, 3pdt:A, 4zme:B, 4zmf:A, 4zmf:B, 4zs4:A, 4zs4:B
3 1ia9:B 280 111 0.1567 0.1500 0.3784 1.50e-16 1ia9:A, 1iah:A, 1iah:B, 1iaj:B
4 8fny:A 497 102 0.1343 0.0724 0.3529 1.40e-12 8fny:C, 8fo6:A, 8gm5:A, 7shq:A
5 1iaj:A 253 108 0.1418 0.1502 0.3519 3.03e-12
6 8gm4:A 462 102 0.1343 0.0779 0.3529 3.98e-11
7 8jpx:B 770 100 0.0784 0.0273 0.2100 1.6 8jpx:A
8 1z26:A 716 100 0.0784 0.0293 0.2100 1.9 1z25:A
9 4wqs:D 1151 64 0.0560 0.0130 0.2344 2.9
10 2o5j:D 1264 64 0.0560 0.0119 0.2344 2.9 2o5j:N
11 4wqs:N 1288 64 0.0560 0.0116 0.2344 2.9
12 3aoh:I 1289 64 0.0560 0.0116 0.2344 2.9 3aoi:I
13 3eql:D 1321 64 0.0560 0.0114 0.2344 2.9 3eql:N, 8hsg:J, 8hsh:J, 8hsl:J, 8hsr:J, 6m6a:D, 6m6b:D, 6m6c:D, 2o5i:D, 2o5i:N, 2ppb:D, 2ppb:N
14 2a68:D 1392 64 0.0560 0.0108 0.2344 2.9 2a68:N, 2a69:D, 2a69:N, 2a6e:D, 2a6e:N, 2a6h:D, 2a6h:N, 2be5:D, 2be5:N, 2cw0:D, 2cw0:N, 1iw7:D, 1iw7:N, 1smy:D, 1smy:N, 1zyr:D, 1zyr:N
15 5x22:D 1438 64 0.0560 0.0104 0.2344 2.9
16 3dxj:D 1504 64 0.0560 0.0100 0.2344 2.9 6cuu:D, 5d4c:D, 5d4c:N, 5d4d:D, 5d4d:N, 5d4e:D, 5d4e:N, 3dxj:N, 5e17:D, 5e18:D, 7eh0:D, 7eh1:D, 7eh2:D, 7eh2:N, 4g7h:D, 4g7h:N, 4g7o:D, 4g7o:N, 4g7z:D, 4g7z:N, 6kqd:D, 6kqd:N, 6kqe:D, 6kqf:D, 6kqg:D, 6kqh:D, 6kql:D, 6kqm:D, 6kqn:D, 6l74:D, 6lts:D, 7mlb:D, 7mli:D, 7mlj:D, 4oin:D, 4oio:D, 4oip:D, 4oiq:D, 4oir:D, 6ovr:D, 6ovy:D, 6ow3:D, 6oy5:D, 6oy6:D, 6oy7:D, 6p70:D, 6p71:D, 4q4z:D, 4q5s:D, 5tmc:D, 5tmf:D, 5vo8:D, 5voi:D, 8w8n:D, 8w8o:D, 8w8p:D, 3wod:D, 6wox:D, 6woy:D, 5x21:D, 5x22:N, 5xj0:D, 4xln:D, 4xlp:D, 4xlq:D, 4xlr:D, 4xls:D, 1ynj:D, 1ynn:D
17 3ai2:A 263 47 0.0560 0.0570 0.3191 3.9 3ai2:B, 3ai2:H, 3ai2:D, 3ai2:E, 3ai2:C, 3ai2:F, 3ai2:G, 3ai3:A, 3ai3:C, 3ai3:E, 3ai3:G
18 7y47:B 767 109 0.1007 0.0352 0.2477 7.8
19 8dzg:A 420 86 0.0821 0.0524 0.2558 8.0 8dze:A, 8dze:B, 8dze:C, 8dze:D, 8dze:E, 8dze:F, 8dzf:A, 8dzf:B, 8dzf:C, 8dzf:D, 8dzf:E, 8dzf:F, 8dzg:B, 8dzg:C, 8dzg:D, 8dzg:E, 8dzg:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218