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BioLiP
>protein
EPQTTLHKTITPISGQDDKYELSLDITSKL

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7w6b:A 782 29 0.9667 0.0371 1.0000 1.00e-13 7vcn:C, 7vcn:A, 7vcn:D, 7vcn:B
2 1k4j:A 193 20 0.3000 0.0466 0.4500 7.9
3 8auw:A 2900 17 0.3000 0.0031 0.5294 8.0
4 8atu:A 2837 17 0.3000 0.0032 0.5294 8.2 8atu:B, 8atx:A, 8atx:B, 8auk:A, 8auk:B, 8auw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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