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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGP
YEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLV
WYGDEYGQELGIKWGSKWKKELM

The query sequence (length=183) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ijd:A 215 183 1.0000 0.8512 1.0000 5.39e-139 4ijd:B, 6nm4:A, 6nm4:B
2 4c1q:A 173 170 0.8361 0.8844 0.9000 2.06e-116 4c1q:B
3 3ray:A 159 165 0.3934 0.4528 0.4364 7.38e-47
4 2l9z:A 39 28 0.0546 0.2564 0.3571 0.066
5 6xlp:A 586 59 0.0984 0.0307 0.3051 0.56
6 1e3e:A 376 50 0.0874 0.0426 0.3200 1.8 1e3e:B, 1e3i:A, 1e3i:B, 1e3l:A, 1e3l:B
7 6pz0:A 185 63 0.1038 0.1027 0.3016 4.3 6pz0:B, 6q1b:A, 6q1b:B, 6q1l:A, 6q1l:B, 6tyk:A, 6tyk:B
8 3lpp:B 869 54 0.0929 0.0196 0.3148 5.8 3lpp:D
9 8pjn:b 296 73 0.1093 0.0676 0.2740 6.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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