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BioLiP
>protein
EPPSIWRLFHRQAQAFNFVKSCKEDVHVFALECKVGDGQRIYLVTTYAEFWFYYKSRKNLLHCYEVIPENAVCKLYFDLE
FNKPANPGADGKKMVALLIEYVCKALQELYGVNCSAEDVLNLDSSTDEKFSRHLIFQLHDVAFKDNIHVGNFLRKILQPA
LDLLDLSFLVVKNNMGEKHLFVDLGVYTRNRNFRLYKSSKIGKRVALEVTEDNKFFPIQSKDVSDEYQYFLSSLVSNVRF
SDTLRILTCEP

The query sequence (length=251) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5l2x:A 271 252 1.0000 0.9262 0.9960 0.0 7jk1:A, 7jk1:B, 7jkl:A, 7jkl:B, 7jkp:A, 7jkp:B, 7jl8:A, 7jl8:B, 7jlg:A, 7jlg:B, 5l2x:B
2 7s9v:A 1296 77 0.0996 0.0193 0.3247 0.55
3 6hzn:A 743 45 0.0637 0.0215 0.3556 2.0
4 6sjx:A 182 78 0.0876 0.1209 0.2821 3.4 6sjw:A
5 7w3u:A 343 41 0.0558 0.0408 0.3415 3.6 7w3r:A, 7w3u:B, 7w3u:C
6 8tj5:0 1246 22 0.0518 0.0104 0.5909 4.3 8tj5:Y
7 6okp:K 133 18 0.0398 0.0752 0.5556 6.1 7ugo:N, 7ugp:M, 7ugp:N
8 6ieq:H 231 17 0.0398 0.0433 0.5882 7.0 5cey:D, 8d50:H, 6mug:H, 6nnf:H, 5t3s:H, 5t3x:H, 8tgo:O, 8tgo:f, 7ucf:H
9 6vly:A 293 59 0.0717 0.0614 0.3051 7.9 6vly:B, 6vly:C, 6vly:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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