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BioLiP
>protein
EPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGR

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gnj:B 77 77 1.0000 1.0000 1.0000 1.32e-50 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
2 8ia3:E 111 87 0.3766 0.2613 0.3333 4.05e-05 8ia3:A, 8ia3:B, 8ia3:F
3 5i50:B 96 73 0.3506 0.2812 0.3699 2.02e-04 5i50:A, 1nkp:A, 1nkp:D
4 7xi3:A 287 53 0.2468 0.0662 0.3585 0.001
5 1an4:A 65 52 0.2338 0.2769 0.3462 0.002 1an4:B
6 5eyo:C 88 51 0.2208 0.1932 0.3333 0.005 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
7 1hlo:A 80 51 0.2208 0.2125 0.3333 0.006
8 8osb:B 66 43 0.2338 0.2727 0.4186 0.006
9 8ow1:B 116 47 0.2468 0.1638 0.4043 0.007 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
10 5nj8:D 134 51 0.2338 0.1343 0.3529 0.011
11 7xi4:A 283 51 0.2338 0.0636 0.3529 0.012 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
12 4zpr:A 235 54 0.2338 0.0766 0.3333 0.029
13 4s2r:P 615 52 0.2078 0.0260 0.3077 0.049 4s2r:Q, 4s2t:P, 4s2t:Q
14 8osl:N 290 57 0.2208 0.0586 0.2982 0.15 4h10:A, 8osk:N, 8osl:P
15 7xq5:A 75 47 0.2208 0.2267 0.3617 0.38
16 7d8t:A 199 51 0.2078 0.0804 0.3137 0.46 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
17 7tby:A 1788 44 0.2208 0.0095 0.3864 0.76 7tc0:A
18 7roq:A 1831 44 0.2208 0.0093 0.3864 0.76
19 7tbw:A 1928 44 0.2208 0.0088 0.3864 0.76
20 7m1q:A 1911 49 0.2078 0.0084 0.3265 1.4
21 8f5b:A 1924 49 0.2078 0.0083 0.3265 1.4 7lkz:A
22 7e7o:A 2003 49 0.2078 0.0080 0.3265 1.4 7lkp:A
23 7e7q:A 1958 30 0.1429 0.0056 0.3667 1.9
24 7w02:A 1566 45 0.2208 0.0109 0.3778 4.0
25 4eot:A 92 19 0.1299 0.1087 0.5263 6.0 4eot:B
26 2j28:9 430 26 0.1299 0.0233 0.3846 9.8 5aka:5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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