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BioLiP
>protein
EPLAIDVHRDANCGCCKDWIKHLEANGFKVTDHVEADMSAVKSRLGVPYSMGSCHTGVIDGKFVEGHVPAADILKLRERA
DLVGAAVPGMPVGSPGMEMGDRQDAYQVVGLTRSGQASVLAEYPGR

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6wje:A 126 126 1.0000 1.0000 1.0000 2.14e-91 6wis:A, 6wis:B, 6wje:B, 6wje:C, 6wje:D, 6wje:E, 6wje:F
2 8xme:A 1176 64 0.1905 0.0204 0.3750 1.3 7eu0:A, 8xmb:A, 8xmc:A, 8xmd:A
3 4op4:B 265 62 0.1508 0.0717 0.3065 1.5 4op4:A
4 5frt:E 105 52 0.1270 0.1524 0.3077 1.9 5ffi:E
5 7eu1:A 1065 35 0.1270 0.0150 0.4571 2.9
6 8kcc:K 508 42 0.1032 0.0256 0.3095 4.2 8j90:K, 8kcb:K, 8wh5:K, 8wh8:K, 8wh9:K, 8wha:K, 8wha:L
7 1ayo:B 130 46 0.0952 0.0923 0.2609 6.5
8 5zdm:A 198 36 0.0952 0.0606 0.3333 7.1 5zdn:A
9 5csr:C 220 38 0.0952 0.0545 0.3158 9.2 5csr:A, 5csr:B, 5csr:D, 5css:A, 5css:B, 5css:C, 5css:D
10 6k8t:A 662 98 0.1905 0.0363 0.2449 9.6 6k8t:B, 6k8u:A, 6k8u:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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